Cmyd_10009547 (Chelonia mydas)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Cmyd_10009547 T244524_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF8
M03335_2.00 		Homo sapiens
HCGAAACYGAAACY
RGTTTCRGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_1 		0.707 0.707
IRF8
M03336_2.00 		Homo sapiens
HCGAAACCGAAACT
AGTTTCGGTTTCGD		 SELEX
Jolma et al.(2013)
IRF8_2 		0.707 0.707
IRF8
M05541_2.00 		Homo sapiens
NYGAAASYGAAASHN
NDSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_HT-SELEX 		0.707 0.707
IRF8
M05543_2.00 		Homo sapiens
NCGAAACYGAAACYN
NRGTTTCRGTTTCGN		 SELEX
Yin et al.(2017)
IRF8_FL_HT-SELEX 		0.707 0.707
IRF8
M09236_2.00 		Homo sapiens
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_HUMAN.H11MO.0.B 		0.707 0.707
Irf8
M09246_2.00 		Mus musculus
NDDDRRGGAASTGAAASYNN
NNRSTTTCASTTCCYYHHHN		 Misc
Kulakovskiy et al.(2013)
IRF8_MOUSE.H11MO.0.A 		0.707 0.707
IRF8
M10890_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ICSBP_Q6 		0.707 0.707
IRF8
M10891_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF8_Q6 		0.707 0.707
IRF8
M05542_2.00 		Homo sapiens
NYGAAASYGAAASYN
NRSTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_eDBD_Methyl-HT-SELEX 		0.707 0.707
IRF8
M05544_2.00 		Homo sapiens
NYGAAASYGAAACYD
HRGTTTCRSTTTCRN		 SELEX
Yin et al.(2017)
IRF8_FL_Methyl-HT-SELEX 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10009547 IRF 188 258

Links

Other IRF family TFs
Other Chelonia mydas TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000003518 Pelodiscus sinensis ENSPSIG00000003518 I 0.964
Aan_R015695 Calypte anna Aan_R015695 I 0.914
Alligator_sinensis_CCG000346.1 Alligator sinensis Alligator_sinensis_CCG000346.1 N 0.897
Afo_R010468 Aptenodytes forsteri Afo_R010468 I 0.895
ENSFALG00000005506 Ficedula albicollis ENSFALG00000005506 I 0.879
ENSLACG00000007228 Latimeria chalumnae ENSLACG00000007228 I 0.862
ENSLOCG00000003532 Lepisosteus oculatus ENSLOCG00000003532 I 0.862
ENSTGUG00000006609 Taeniopygia guttata ENSTGUG00000006609 I 0.862
Gfo_R005312 Geospiza fortis Gfo_R005312 I 0.862
ENSMODG00000019483 Monodelphis domestica ENSMODG00000019483 I 0.828
ENSAMXG00000002697 Astyanax mexicanus ENSAMXG00000002697 I 0.810
irf10 Oryzias latipes ENSORLG00000011745 N 0.793
ENSBTAG00000031214 Bos taurus ENSBTAG00000031214 N 0.776
ENSPFOG00000009490 Poecilia formosa ENSPFOG00000009490 N 0.776
irf10 Gasterosteus aculeatus ENSGACG00000015123 I 0.759
ENSONIG00000005631 Oreochromis niloticus ENSONIG00000005631 I 0.741
irf10 Tetraodon nigroviridis ENSTNIG00000012613 I 0.741
irf10 Takifugu rubripes ENSTRUG00000002917 I 0.741
Myotis_brandtii_IRF4_10023767 Myotis brandtii Myotis_brandtii_IRF4_10023767 N 0.741
ENSAMXG00000003452 Astyanax mexicanus ENSAMXG00000003452 I 0.724
IRF8 Equus caballus ENSECAG00000015449 I 0.724
irf8 Gasterosteus aculeatus ENSGACG00000015958 I 0.724
ENSGMOG00000002737 Gadus morhua ENSGMOG00000002737 N 0.724
IRF8 Loxodonta africana ENSLAFG00000010973 I 0.724
ENSONIG00000009637 Oreochromis niloticus ENSONIG00000009637 I 0.724
irf8 Oryzias latipes ENSORLG00000018216 I 0.724
IRF8 Procavia capensis ENSPCAG00000004460 I 0.724
ENSPFOG00000017639 Poecilia formosa ENSPFOG00000017639 I 0.724
irf4a Tetraodon nigroviridis ENSTNIG00000005370 I 0.724
irf8 Tetraodon nigroviridis ENSTNIG00000009283 I 0.724
irf8 Takifugu rubripes ENSTRUG00000018213 I 0.724
IRF8 Anolis carolinensis ENSACAG00000005409 I 0.707
ENSAMXG00000006093 Astyanax mexicanus ENSAMXG00000006093 I 0.707
ENSAMXG00000016370 Astyanax mexicanus ENSAMXG00000016370 I 0.707
IRF8 Bos taurus ENSBTAG00000017824 I 0.707
ENSCAFG00000007099 Canis familiaris ENSCAFG00000007099 I 0.707
ENSCSAG00000003142 Chlorocebus sabaeus ENSCSAG00000003142 I 0.707
ENSDNOG00000030863 Dasypus novemcinctus ENSDNOG00000030863 N 0.707
IRF8 Erinaceus europaeus ENSEEUG00000002644 I 0.707
IRF8 Homo sapiens ENSG00000140968 D 0.707
IRF8 Gallus gallus ENSGALG00000005757 I 0.707
IRF8 Gorilla gorilla ENSGGOG00000028251 I 0.707
ENSLACG00000005859 Latimeria chalumnae ENSLACG00000005859 I 0.707
ENSLOCG00000001013 Lepisosteus oculatus ENSLOCG00000001013 I 0.707
IRF8 Macaca mulatta ENSMMUG00000008125 I 0.707
ENSMPUG00000008641 Mustela putorius furo ENSMPUG00000008641 I 0.707
Irf8 Mus musculus ENSMUSG00000041515 D 0.707
ENSNLEG00000011429 Nomascus leucogenys ENSNLEG00000011429 I 0.707
IRF8 Ornithorhynchus anatinus ENSOANG00000003741 I 0.707
ENSOARG00000011513 Ovis aries ENSOARG00000011513 I 0.707
IRF8 Otolemur garnettii ENSOGAG00000009262 I 0.707
IRF8 Ochotona princeps ENSOPRG00000002139 I 0.707
irf4a Oryzias latipes ENSORLG00000017242 I 0.707
ENSPANG00000024770 Papio anubis ENSPANG00000024770 I 0.707
ENSPFOG00000015506 Poecilia formosa ENSPFOG00000015506 I 0.707
ENSPPYG00000007620 Pongo abelii ENSPPYG00000007620 I 0.707
IRF8 Pan troglodytes ENSPTRG00000008435 I 0.707
Irf8 Rattus norvegicus ENSRNOG00000017869 I 0.707
ENSSSCG00000022547 Sus scrofa ENSSSCG00000022547 I 0.707
ENSSSCG00000023184 Sus scrofa ENSSSCG00000023184 I 0.707
IRF4 Tursiops truncatus ENSTTRG00000001849 I 0.707
IRF8 Tursiops truncatus ENSTTRG00000016024 I 0.707
ENSXMAG00000017015 Xiphophorus maculatus ENSXMAG00000017015 I 0.707
ENSP00000268638-D1 Bos grunniens ENSP00000268638-D1 I 0.707
ENSP00000268638 Macaca fascicularis ENSP00000268638 I 0.707
Gfo_R000501 Geospiza fortis Gfo_R000501 I 0.707
Ogr04948 Ophisaurus gracilis Ogr04948 N 0.707
irf10 Xenopus tropicalis XB-GENE-1033046 I 0.707
irf4 Xenopus tropicalis XB-GENE-988321 I 0.707
XP_002934991 Xenopus tropicalis XP_002934991 I 0.707