Solyc06g065440.1 (Solanum lycopersicum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 Solyc06g065440.1 T129373_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STOP1
M06801_2.00 		Arabidopsis thaliana
CCTBCMCCAGDTRHHMCYY
RRGKDDYAHCTGGKGVAGG		 Dap-seq
OMalley et al.(2016)
STOP1_col_a 		0.774 0.889
STOP1
M06802_2.00 		Arabidopsis thaliana
RCCTNCMCCRGWWRN
NYWWCYGGKGNAGGY		 Dap-seq
OMalley et al.(2016)
STOP1_colamp_a 		0.774 0.889
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g065440.1.1 C2H2 ZF 269 291
Solyc06g065440.1.1 C2H2 ZF 290 321

Links

Other C2H2 ZF family TFs
Other Solanum lycopersicum TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00017p00086440 Amborella trichopoda AMTR_s00017p00086440 I
Aquca_017_00778 Aquilegia coerulea Aquca_017_00778 I
BGIOSGA004888 Oryza indica BGIOSGA004888 I
Bo8g027000 Brassica oleracea Bo8g027000 I 0.774
Bostr.1040s0032 Boechera stricta Bostr.1040s0032 I 0.774
Bra040971 Brassica rapa Bra040971 I
BRADI2G56320 Brachypodium distachyon BRADI2G56320 I
Cagra.12398s0002 Capsella grandiflora Cagra.12398s0002 I 0.774
Carubv10008876m.g Capsella rubella Carubv10008876m.g I 0.774
cassava22193.valid.m1 Manihot esculenta cassava22193.valid.m1 I 0.793
cassava24483.valid.m1 Manihot esculenta cassava24483.valid.m1 I 0.774
Ca_04300 Cicer arietinum Ca_04300 I 0.774
Ciclev10000850m.g Citrus clementina Ciclev10000850m.g I 0.774
Cla016623 Citrullus lanatus Cla016623 I 0.768
Cucsa.079940 Cucumis sativus Cucsa.079940 I 0.768
Eucgr.F02627 Eucalyptus grandis Eucgr.F02627 I 0.774
F775_04088 Aegilops tauschii F775_04088 I
gene27486-v1.0-hybrid Fragaria vesca gene27486-v1.0-hybrid I 0.774
GLYMA10G35940 Glycine max GLYMA10G35940 I
GLYMA16G27280 Glycine max GLYMA16G27280 I
GLYMA20G31650 Glycine max GLYMA20G31650 I
Gorai.006G131700 Gossypium raimondii Gorai.006G131700 I 0.774
GRMZM2G075956 Zea mays GRMZM2G075956 I
GRMZM2G129428 Zea mays GRMZM2G129428 I
GSMUA_Achr10G15970_001 Musa acuminata GSMUA_Achr10G15970_001 I
GSMUA_Achr5G01170_001 Musa acuminata GSMUA_Achr5G01170_001 I 0.774
LPERR01G33350 Leersia perrieri LPERR01G33350 I
Lus10009435.g Linum usitatissimum Lus10009435.g I
MDP0000141403 Malus domestica MDP0000141403 I 0.774
MDP0000199559 Malus domestica MDP0000199559 I 0.774
MDP0000453148 Malus domestica MDP0000453148 I
MDP0000551046 Malus domestica MDP0000551046 I 0.774
MDP0000807856 Malus domestica MDP0000807856 I 0.774
mgf000060m Mimulus guttatus mgf000060m I 0.774
MLOC_10987 Hordeum vulgare MLOC_10987 I
OB01G47470 Oryza brachyantha OB01G47470 I
OBART01G38810 Oryza barthii OBART01G38810 I
OLONG_020555 Oryza longistaminata OLONG_020555 I
ONIVA01G43630 Oryza nivara ONIVA01G43630 I
OPUNC01G37530 Oryza punctata OPUNC01G37530 I
orange1.1g009831m.g Citrus sinensis orange1.1g009831m.g I 0.774
ORGLA01G0326400 Oryza glaberrima ORGLA01G0326400 I
ORUFI01G42150 Oryza rufipogon ORUFI01G42150 I
OS01G0871200 Oryza sativa OS01G0871200 I
Pavir.J06328 Panicum virgatum Pavir.J06328 I 0.774
Pavir.J12018 Panicum virgatum Pavir.J12018 I 0.774
Pavir.J14096 Panicum virgatum Pavir.J14096 I
PGSC0003DMG400009234 Solanum tuberosum PGSC0003DMG400009234 I 0.784
PK23301.1 Cannabis sativa PK23301.1 I 0.774
Pm022201 Prunus mume Pm022201 I 0.774
POPTR_0019s11520 Populus trichocarpa POPTR_0019s11520 I
PRUPE_ppa004510mg Prunus persica PRUPE_ppa004510mg I 0.774
SapurV1A.0287s0150 Salix purpurea SapurV1A.0287s0150 I
SapurV1A.2334s0030 Salix purpurea SapurV1A.2334s0030 I
Sb03g041170 Sorghum bicolor Sb03g041170 I
Si001053m.g Setaria italica Si001053m.g I
Solyc11g017140.1 Solanum lycopersicum Solyc11g017140.1 I 0.784
STOP1 Arabidopsis thaliana AT1G34370 D 0.774
STOP1 Vitis vinifera VIT_18s0072g00840 I 0.774
STOP1 Arabidopsis lyrata fgenesh2_kg.1__3547__AT1G34370.2 I 0.774
TCM_036719 Theobroma cacao TCM_036719 I 0.774
Thhalv10007411m.g Eutrema salsugineum Thhalv10007411m.g I 0.774
TRAES3BF044200110CFD_g Triticum aestivum TRAES3BF044200110CFD_g I
Traes_3AL_00FAACD5D Triticum aestivum Traes_3AL_00FAACD5D I
Traes_3DL_0284E68CC1 Triticum aestivum Traes_3DL_0284E68CC1 I