CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

TCM_000780 *(Theobroma cacao)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00096 (zf-C2H2)	IPR007087	TCM_000780	T130164_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AZF1 M01860_2.00	Arabidopsis thaliana	NWSYDNN	NNHRSWN	PBM Weirauch et al.(2014) pTH7163	0.817	0.870
AZF1 M06826_2.00	Arabidopsis thaliana	WCACTVWCWNH	DNWGWBAGTGW	Dap-seq OMalley et al.(2016) AZF1_colamp_a	0.817	0.870
AZF2 M01854_2.00	Arabidopsis thaliana	NASTRNN	NNYASTN	PBM Weirauch et al.(2014) pTH8258	0.796	0.848
ZAT6 M00861_2.00	Arabidopsis thaliana	NNHRSTN	NASYDNN	PBM Franco-Zorrilla et al.(2014) ZAT6	0.796	0.826
ZAT10 M01852_2.00	Arabidopsis thaliana	NNHASWN	NWSTDNN	PBM Weirauch et al.(2014) pTH7255	0.793	0.804
ZAT10 M06799_2.00	Arabidopsis thaliana	WSHHCACT	AGTGDDSW	Dap-seq OMalley et al.(2016) STZ_colamp_a	0.793	0.804
ZAT10 M06800_2.00	Arabidopsis thaliana	YWSHNHCASTN	NASTGDNDSWR	Dap-seq OMalley et al.(2016) STZ_col	0.793	0.804
ZAT4 M01168_2.00	Arabidopsis thaliana	NNHRSTN	NASYDNN	PBM Lambert et al.(2019) pTH11142	0.776	0.717
ZAT9 M06817_2.00	Arabidopsis thaliana	YTACTWHH	DDWAGTAR	Dap-seq OMalley et al.(2016) At3g60580_col_a	0.776	0.717
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
EOX91662	C2H2 ZF	78	100	YKCTVCNKAFPSYQALGGHKASH
EOX91662	C2H2 ZF	143	165	HTCSICFKTFSSGQALGGHKRCH

Links
Other C2H2 ZF family TFs
Other *Theobroma cacao* TFs

174 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BRADI2G08810	Brachypodium distachyon	BRADI2G08810	N	0.000
EF517601.1_FG010	Zea mays	EF517601.1_FG010	N	0.000
F775_00318	Aegilops tauschii	F775_00318	N	0.000
GSMUA_Achr10G02050_001	Musa acuminata	GSMUA_Achr10G02050_001	N	0.000
GSMUA_Achr8G22220_001	Musa acuminata	GSMUA_Achr8G22220_001	N	0.000
MLOC_76252	Hordeum vulgare	MLOC_76252	N	0.000
OB01G19570	Oryza brachyantha	OB01G19570	N	0.000
OMERI01G09440	Oryza meridionalis	OMERI01G09440	N	0.000
ONIVA11G16880	Oryza nivara	ONIVA11G16880	N	0.000
ORGLA01G0085600	Oryza glaberrima	ORGLA01G0085600	N	0.000
ORUFI01G10280	Oryza rufipogon	ORUFI01G10280	N	0.000
OS01G0249900	Oryza sativa	OS01G0249900	N	0.000
Pavir.Ea00827	Panicum virgatum	Pavir.Ea00827	N	0.000
Sb03g005180	Sorghum bicolor	Sb03g005180	N	0.000
Sb03g009480	Sorghum bicolor	Sb03g009480	N	0.000
Si005179m.g	Setaria italica	Si005179m.g	N	0.000