Alligator_sinensis_CCG001309.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG001309.1 T132973_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KLF10
M04489_2.00 		Homo sapiens
RMCACRCCCMYVHCACRCCCMC
GKGGGYGTGDBRKGGGYGTGKY		 SELEX
Yin et al.(2017)
KLF10_eDBD_HT-SELEX 		0.824 0.957
KLF10
M08246_2.00 		Homo sapiens
RCCMCRCCCH
DGGGYGKGGY		 ChIP-seq
Najafabadi et al.(2015b)
KLF10 		0.824 0.957
KLF10
M08317_2.00 		Homo sapiens
SMCMCRCCCMYNBSN
NSVNRKGGGYGKGKS		 ChIP-seq
Schmitges et al.(2016)
Q13118.MEME 		0.824 0.957
KLF10
M10228_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TIEG1_Q6 		0.824 0.957
KLF10
M04490_2.00 		Homo sapiens
RMCACRCCCMYGMCACRCCCHC
GDGGGYGTGKCRKGGGYGTGKY		 SELEX
Yin et al.(2017)
KLF10_eDBD_Methyl-HT-SELEX 		0.824 0.957
KLF11
M00242_2.00 		Homo sapiens
MCGCCCCC
GGGGGCGK		 PBM
Barrera et al.(2016)
KLF11_REF 		0.771 0.855
KLF11
M04554_2.00 		Homo sapiens
VMCMCRCCCMYNMCACGCCCMC
GKGGGCGTGKNRKGGGYGKGKB		 SELEX
Yin et al.(2017)
KLF11_eDBD_HT-SELEX 		0.771 0.855
KLF11
M10261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FKLF_Q5 		0.771 0.855
KLF11
M00241_2.00 		Homo sapiens
MCGCCCMC
GKGGGCGK		 PBM
Barrera et al.(2016)
KLF11_R402Q 		0.771 0.855
KLF11
M04555_2.00 		Homo sapiens
VMCMCRCCCHYNHCACGCCCMC
GKGGGCGTGDNRDGGGYGKGKB		 SELEX
Yin et al.(2017)
KLF11_eDBD_Methyl-HT-SELEX 		0.771 0.855
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG001309.1 C2H2 ZF 421 445
Alligator_sinensis_CCG001309.1 C2H2 ZF 451 475
Alligator_sinensis_CCG001309.1 C2H2 ZF 481 503

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

158 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R003929 Calypte anna Aan_R003929 I 0.808
Aan_R015392 Calypte anna Aan_R015392 I 0.803
ACEP10867 Atta cephalotes ACEP10867 I 0.757
ACEP25218 Atta cephalotes ACEP25218 I 0.756
Afo_R002224 Aptenodytes forsteri Afo_R002224 I 0.824
Afo_R015752 Aptenodytes forsteri Afo_R015752 I 0.803
Alligator_sinensis_CCG017491.1 Alligator sinensis Alligator_sinensis_CCG017491.1 I 0.803
Aqu1.219264 Amphimedon queenslandica Aqu1.219264 I 0.762
Brh_R008046 Buceros rhinoceros Brh_R008046 I 0.824
Brh_R012523 Buceros rhinoceros Brh_R012523 I 0.807
CapteG131091 Capitella teleta CapteG131091 I 0.757
Cmyd_10010871 Chelonia mydas Cmyd_10010871 I 0.827
DAPPUDRAFT_312628 Daphnia pulex DAPPUDRAFT_312628 I 0.772
ENSAMEG00000011355 Ailuropoda melanoleuca ENSAMEG00000011355 I 0.771
ENSAMEG00000014775 Ailuropoda melanoleuca ENSAMEG00000014775 I 0.824
ENSAMXG00000004794 Astyanax mexicanus ENSAMXG00000004794 I 0.784
ENSAMXG00000011768 Astyanax mexicanus ENSAMXG00000011768 I 0.787
ENSAPLG00000004145 Anas platyrhynchos ENSAPLG00000004145 I 0.811
ENSAPLG00000009146 Anas platyrhynchos ENSAPLG00000009146 I 0.803
ENSBTAP00000019142-D1 Bos grunniens ENSBTAP00000019142-D1 I 0.824
ENSCING00000006082 Ciona intestinalis ENSCING00000006082 I 0.785
ENSCSAG00000007163 Chlorocebus sabaeus ENSCSAG00000007163 I 0.771
ENSCSAG00000011934 Chlorocebus sabaeus ENSCSAG00000011934 I 0.824
ENSCSAVG00000009024 Ciona savignyi ENSCSAVG00000009024 I 0.769
ENSDORG00000012974 Dipodomys ordii ENSDORG00000012974 I 0.787
ENSFALG00000005917 Ficedula albicollis ENSFALG00000005917 I 0.824
ENSFALG00000006648 Ficedula albicollis ENSFALG00000006648 I 0.787
ENSGALG00000016063 Gallus gallus ENSGALG00000016063 I 0.808
ENSGMOG00000003463 Gadus morhua ENSGMOG00000003463 I 0.784
ENSGMOG00000011144 Gadus morhua ENSGMOG00000011144 I 0.787
ENSLACG00000010260 Latimeria chalumnae ENSLACG00000010260 I 0.803
ENSLACG00000013560 Latimeria chalumnae ENSLACG00000013560 I 0.820
ENSLOCG00000016837 Lepisosteus oculatus ENSLOCG00000016837 I 0.796
ENSMEUG00000000662 Macropus eugenii ENSMEUG00000000662 I 0.824
ENSMICG00000002285 Microcebus murinus ENSMICG00000002285 I 0.827
ENSMPUG00000013287 Mustela putorius furo ENSMPUG00000013287 I 0.787
ENSMPUG00000015132 Mustela putorius furo ENSMPUG00000015132 I 0.824
ENSNLEG00000003646 Nomascus leucogenys ENSNLEG00000003646 I 0.824
ENSNLEG00000013701 Nomascus leucogenys ENSNLEG00000013701 I 0.787
ENSOARG00000015319 Ovis aries ENSOARG00000015319 I 0.787
ENSOARG00000017131 Ovis aries ENSOARG00000017131 I 0.824
ENSONIG00000003704 Oreochromis niloticus ENSONIG00000003704 I 0.791
ENSONIG00000016428 Oreochromis niloticus ENSONIG00000016428 I 0.771
ENSONIG00000018808 Oreochromis niloticus ENSONIG00000018808 I 0.780
ENSP00000285407 Macaca fascicularis ENSP00000285407 I 0.824
ENSP00000307023 Macaca fascicularis ENSP00000307023 I 0.771
ENSP00000307023-D1 Bos grunniens ENSP00000307023-D1 I 0.771
ENSPANG00000008644 Papio anubis ENSPANG00000008644 I 0.771
ENSPANG00000009227 Papio anubis ENSPANG00000009227 I 0.824
ENSPFOG00000005130 Poecilia formosa ENSPFOG00000005130 I 0.803
ENSPFOG00000015744 Poecilia formosa ENSPFOG00000015744 I 0.780
ENSPMAG00000001515 Petromyzon marinus ENSPMAG00000001515 I 0.768
ENSPPYG00000012659 Pongo abelii ENSPPYG00000012659 I 0.771
ENSPPYG00000018800 Pongo abelii ENSPPYG00000018800 I 0.824
ENSPSIG00000010816 Pelodiscus sinensis ENSPSIG00000010816 I 0.787
ENSPSIG00000012678 Pelodiscus sinensis ENSPSIG00000012678 I 0.827
ENSSHAG00000005846 Sarcophilus harrisii ENSSHAG00000005846 I 0.775
ENSSHAG00000018290 Sarcophilus harrisii ENSSHAG00000018290 I 0.824
ENSSSCG00000027819 Sus scrofa ENSSSCG00000027819 I 0.824
ENSSTOG00000002442 Ictidomys tridecemlineatus ENSSTOG00000002442 I 0.771
ENSSTOG00000027022 Ictidomys tridecemlineatus ENSSTOG00000027022 I 0.824
ENSTSYG00000003347 Tarsius syrichta ENSTSYG00000003347 I 0.824
ENSXMAG00000009885 Xiphophorus maculatus ENSXMAG00000009885 I 0.780
ENSXMAG00000010947 Xiphophorus maculatus ENSXMAG00000010947 I 0.803
estExt_fgenesh2_pg.C_5760011 Branchiostoma floridae estExt_fgenesh2_pg.C_5760011 I 0.768
GB45040 Apis mellifera GB45040 I 0.761
Gfo_R006024 Geospiza fortis Gfo_R006024 I 0.823
Gfo_R015265 Geospiza fortis Gfo_R015265 I 0.777
KLF10 Anolis carolinensis ENSACAG00000009177 I 0.807
KLF10 Bos taurus ENSBTAG00000014396 I 0.824
KLF10 Canis familiaris ENSCAFG00000000638 I 0.824
KLF10 Callithrix jacchus ENSCJAG00000016069 I 0.824
KLF10 Cavia porcellus ENSCPOG00000011105 I 0.824
KLF10 Dasypus novemcinctus ENSDNOG00000017020 I 0.824
Klf10 Dipodomys ordii ENSDORG00000015269 I 0.824
KLF10 Equus caballus ENSECAG00000013153 I 0.824
KLF10 Erinaceus europaeus ENSEEUG00000009077 I 0.808
KLF10 Echinops telfairi ENSETEG00000016283 I 0.824
KLF10 Felis catus ENSFCAG00000026958 I 0.824
KLF10 Homo sapiens ENSG00000155090 D 0.824
KLF10 Gasterosteus aculeatus ENSGACG00000004632 I 0.767
KLF10 Gorilla gorilla ENSGGOG00000015206 I 0.824
KLF10 Loxodonta africana ENSLAFG00000000037 I 0.824
KLF10 Meleagris gallopavo ENSMGAG00000012319 I 0.811
KLF10 Myotis lucifugus ENSMLUG00000012969 I 0.824
KLF10 Macaca mulatta ENSMMUG00000018815 I 0.824
KLF10 Monodelphis domestica ENSMODG00000005896 I 0.824
Klf10 Mus musculus ENSMUSG00000037465 I 0.824
KLF10 Ornithorhynchus anatinus ENSOANG00000013800 I 0.824
KLF10 Oryctolagus cuniculus ENSOCUG00000016141 I 0.824
KLF10 Otolemur garnettii ENSOGAG00000014528 I 0.824
KLF10 Ochotona princeps ENSOPRG00000006656 I 0.824
KLF10 Pan troglodytes ENSPTRG00000020484 I 0.824
KLF10 Pteropus vampyrus ENSPVAG00000013271 I 0.824
Klf10 Rattus norvegicus ENSRNOG00000006118 I 0.824
KLF10 Sus scrofa ENSSSCG00000027480 I 0.824
KLF10 Taeniopygia guttata ENSTGUG00000012120 I 0.817
KLF10 Takifugu rubripes ENSTRUG00000010298 I 0.783
KLF10 Tursiops truncatus ENSTTRG00000000383 I 0.824
klf10 Xenopus tropicalis XB-GENE-854761 I 0.804
klf10.L Xenopus laevis XB-GENE-17335049 I 0.804
klf10.S Xenopus laevis XB-GENE-866571 I 0.804
KLF11 Anolis carolinensis ENSACAG00000000128 I 0.791
KLF11 Bos taurus ENSBTAG00000046218 I 0.771
KLF11 Canis familiaris ENSCAFG00000003405 I 0.787
KLF11 Cavia porcellus ENSCPOG00000025767 I 0.757
KLF11 Dasypus novemcinctus ENSDNOG00000035689 I 0.771
KLF11 Equus caballus ENSECAG00000015820 I 0.791
KLF11 Erinaceus europaeus ENSEEUG00000006894 I 0.791
KLF11 Echinops telfairi ENSETEG00000002915 I 0.787
KLF11 Felis catus ENSFCAG00000030965 I 0.775
KLF11 Homo sapiens ENSG00000172059 D 0.771
KLF11 Gasterosteus aculeatus ENSGACG00000001487 I 0.784
KLF11 Gasterosteus aculeatus ENSGACG00000008836 I 0.787
KLF11 Gallus gallus ENSGALG00000016440 I 0.803
KLF11 Gorilla gorilla ENSGGOG00000012494 I 0.771
KLF11 Loxodonta africana ENSLAFG00000032182 I 0.775
KLF11 Meleagris gallopavo ENSMGAG00000014008 I 0.800
KLF11 Myotis lucifugus ENSMLUG00000002295 I 0.807
KLF11 Macaca mulatta ENSMMUG00000002054 I 0.771
KLF11 Monodelphis domestica ENSMODG00000014758 I 0.775
Klf11 Mus musculus ENSMUSG00000020653 I 0.775
KLF11 Ornithorhynchus anatinus ENSOANG00000007790 I 0.775
KLF11 Oryctolagus cuniculus ENSOCUG00000003809 I 0.775
KLF11 Otolemur garnettii ENSOGAG00000026035 I 0.787
KLF11 Ochotona princeps ENSOPRG00000013425 I 0.775
KLF11 Oryzias latipes ENSORLG00000015191 I 0.791
KLF11 Oryzias latipes ENSORLG00000018102 I 0.780
KLF11 Procavia capensis ENSPCAG00000011366 I 0.775
KLF11 Pan troglodytes ENSPTRG00000011645 I 0.771
KLF11 Pteropus vampyrus ENSPVAG00000017463 I 0.758
Klf11 Rattus norvegicus ENSRNOG00000054259 I 0.775
KLF11 Sorex araneus ENSSARG00000004298 I 0.803
KLF11 Tupaia belangeri ENSTBEG00000008268 I 0.791
KLF11 Taeniopygia guttata ENSTGUG00000013041 I 0.784
KLF11 Tetraodon nigroviridis ENSTNIG00000000881 I 0.784
KLF11 Takifugu rubripes ENSTRUG00000008202 I 0.784
KLF11 Takifugu rubripes ENSTRUG00000013598 I 0.791
KLF11 Tursiops truncatus ENSTTRG00000017207 I 0.775
klf11 Xenopus tropicalis XB-GENE-956858 I 0.803
klf11.L Xenopus laevis XB-GENE-956865 I 0.803
klf11.S Xenopus laevis XB-GENE-17345045 I 0.803
klf11a Danio rerio ENSDARG00000030844 I 0.787
klf11b Danio rerio ENSDARG00000013794 I 0.787
Myotis_brandtii_KLF10_10032162 Myotis brandtii Myotis_brandtii_KLF10_10032162 I 0.824
Myotis_brandtii_KLF11_10020832 Myotis brandtii Myotis_brandtii_KLF11_10020832 I 0.807
NEMVEDRAFT_v1g39461 Nematostella vectensis NEMVEDRAFT_v1g39461 I 0.783
NV23733 Nasonia vitripennis NV23733 I 0.757
Ogr04283 Ophisaurus gracilis Ogr04283 I 0.807
PHUM248360 Pediculus humanus PHUM248360 I 0.774
Pvit_03838 Pogona vitticeps Pvit_03838 I 0.811
Pvit_14441 Pogona vitticeps Pvit_14441 I 0.791
Sakowv30032823m.g Saccoglossus kowalevskii Sakowv30032823m.g I 0.780
SINV19724 Solenopsis invicta SINV19724 I 0.757
SPU_026418 Strongylocentrotus purpuratus SPU_026418 I 0.784
Tal_R007530 Tyto alba Tal_R007530 I 0.824
Tal_R013154 Tyto alba Tal_R013154 I 0.803
TC000837 Tribolium castaneum TC000837 I 0.756