Gfo_R015265 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R015265 T135872_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KLF11
M00242_2.00 		Homo sapiens
MCGCCCCC
GGGGGCGK		 PBM
Barrera et al.(2016)
KLF11_REF 		0.782 0.884
KLF11
M04554_2.00 		Homo sapiens
VMCMCRCCCMYNMCACGCCCMC
GKGGGCGTGKNRKGGGYGKGKB		 SELEX
Yin et al.(2017)
KLF11_eDBD_HT-SELEX 		0.782 0.884
KLF11
M10261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FKLF_Q5 		0.782 0.884
KLF11
M00241_2.00 		Homo sapiens
MCGCCCMC
GKGGGCGK		 PBM
Barrera et al.(2016)
KLF11_R402Q 		0.782 0.884
KLF11
M04555_2.00 		Homo sapiens
VMCMCRCCCHYNHCACGCCCMC
GKGGGCGTGDNRDGGGYGKGKB		 SELEX
Yin et al.(2017)
KLF11_eDBD_Methyl-HT-SELEX 		0.782 0.884
KLF10
M04489_2.00 		Homo sapiens
RMCACRCCCMYVHCACRCCCMC
GKGGGYGTGDBRKGGGYGTGKY		 SELEX
Yin et al.(2017)
KLF10_eDBD_HT-SELEX 		0.777 0.797
KLF10
M08246_2.00 		Homo sapiens
RCCMCRCCCH
DGGGYGKGGY		 ChIP-seq
Najafabadi et al.(2015b)
KLF10 		0.777 0.797
KLF10
M08317_2.00 		Homo sapiens
SMCMCRCCCMYNBSN
NSVNRKGGGYGKGKS		 ChIP-seq
Schmitges et al.(2016)
Q13118.MEME 		0.777 0.797
KLF10
M10228_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TIEG1_Q6 		0.777 0.797
KLF10
M04490_2.00 		Homo sapiens
RMCACRCCCMYGMCACRCCCHC
GDGGGYGTGKCRKGGGYGTGKY		 SELEX
Yin et al.(2017)
KLF10_eDBD_Methyl-HT-SELEX 		0.777 0.797
KLF13
M02903_2.00 		Homo sapiens
DDRMCACGCCCCYTTNDK
MHNAARGGGGCGTGKYHH		 SELEX
Jolma et al.(2013)
KLF13_1 		0.760 0.768
KLF13
M04537_2.00 		Homo sapiens
NRCCACRCCCMCN
NGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_eDBD_HT-SELEX 		0.760 0.768
KLF13
M04539_2.00 		Homo sapiens
NRCCACRCCCMYN
NRKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_FL_HT-SELEX 		0.760 0.768
KLF13
M04538_2.00 		Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_eDBD_Methyl-HT-SELEX 		0.760 0.768
KLF13
M04540_2.00 		Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_FL_Methyl-HT-SELEX 		0.760 0.768
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R015265 C2H2 ZF 394 418
Gfo_R015265 C2H2 ZF 424 448
Gfo_R015265 C2H2 ZF 454 476

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
KLF11 Taeniopygia guttata ENSTGUG00000013041 I 0.821
ENSFALG00000006648 Ficedula albicollis ENSFALG00000006648 I 0.817
ENSAMXG00000011768 Astyanax mexicanus ENSAMXG00000011768 I 0.801
ENSAPLG00000009146 Anas platyrhynchos ENSAPLG00000009146 I 0.801
klf11b Danio rerio ENSDARG00000013794 I 0.801
KLF11 Gallus gallus ENSGALG00000016440 I 0.801
ENSLACG00000010260 Latimeria chalumnae ENSLACG00000010260 I 0.801
KLF11 Meleagris gallopavo ENSMGAG00000014008 I 0.801
Aan_R015392 Calypte anna Aan_R015392 I 0.801
Afo_R015752 Aptenodytes forsteri Afo_R015752 I 0.801
Alligator_sinensis_CCG017491.1 Alligator sinensis Alligator_sinensis_CCG017491.1 I 0.801
Tal_R013154 Tyto alba Tal_R013154 I 0.801
klf11.S Xenopus laevis XB-GENE-17345045 I 0.801
klf11 Xenopus tropicalis XB-GENE-956858 I 0.801
klf11.L Xenopus laevis XB-GENE-956865 I 0.801
ENSAMXG00000004794 Astyanax mexicanus ENSAMXG00000004794 I 0.798
klf11a Danio rerio ENSDARG00000030844 I 0.798
KLF11 Equus caballus ENSECAG00000015820 I 0.798
KLF11 Echinops telfairi ENSETEG00000002915 I 0.798
KLF11 Gasterosteus aculeatus ENSGACG00000008836 I 0.798
KLF11 Myotis lucifugus ENSMLUG00000002295 I 0.798
ENSNLEG00000013701 Nomascus leucogenys ENSNLEG00000013701 I 0.798
ENSOARG00000015319 Ovis aries ENSOARG00000015319 I 0.798
ENSONIG00000003704 Oreochromis niloticus ENSONIG00000003704 I 0.798
KLF11 Oryzias latipes ENSORLG00000015191 I 0.798
KLF11 Sorex araneus ENSSARG00000004298 I 0.798
KLF11 Takifugu rubripes ENSTRUG00000013598 I 0.798
Brh_R012523 Buceros rhinoceros Brh_R012523 I 0.798
Myotis_brandtii_KLF11_10020832 Myotis brandtii Myotis_brandtii_KLF11_10020832 I 0.798
KLF11 Gasterosteus aculeatus ENSGACG00000001487 I 0.795
ENSGMOG00000003463 Gadus morhua ENSGMOG00000003463 I 0.795
ENSLOCG00000016837 Lepisosteus oculatus ENSLOCG00000016837 I 0.795
ENSONIG00000018808 Oreochromis niloticus ENSONIG00000018808 I 0.795
KLF11 Oryzias latipes ENSORLG00000018102 I 0.795
ENSPFOG00000015744 Poecilia formosa ENSPFOG00000015744 I 0.795
KLF11 Tetraodon nigroviridis ENSTNIG00000000881 I 0.795
KLF11 Takifugu rubripes ENSTRUG00000008202 I 0.795
ENSXMAG00000009885 Xiphophorus maculatus ENSXMAG00000009885 I 0.795
ENSGMOG00000011144 Gadus morhua ENSGMOG00000011144 I 0.794
KLF11 Tupaia belangeri ENSTBEG00000008268 I 0.794
KLF10 Anolis carolinensis ENSACAG00000009177 I 0.793
ENSAPLG00000004145 Anas platyrhynchos ENSAPLG00000004145 I 0.793
ENSGALG00000016063 Gallus gallus ENSGALG00000016063 I 0.793
KLF10 Meleagris gallopavo ENSMGAG00000012319 I 0.793
Aan_R003929 Calypte anna Aan_R003929 I 0.793
Pvit_03838 Pogona vitticeps Pvit_03838 I 0.793
klf10.L Xenopus laevis XB-GENE-17335049 I 0.793
klf10 Xenopus tropicalis XB-GENE-854761 I 0.793
klf10.S Xenopus laevis XB-GENE-866571 I 0.793
ENSAMEG00000011355 Ailuropoda melanoleuca ENSAMEG00000011355 I 0.785
ENSPSIG00000010816 Pelodiscus sinensis ENSPSIG00000010816 I 0.785
KLF10 Taeniopygia guttata ENSTGUG00000012120 I 0.784
KLF11 Anolis carolinensis ENSACAG00000000128 I 0.782
KLF11 Bos taurus ENSBTAG00000046218 I 0.782
ENSCSAG00000007163 Chlorocebus sabaeus ENSCSAG00000007163 I 0.782
KLF11 Dasypus novemcinctus ENSDNOG00000035689 I 0.782
KLF11 Erinaceus europaeus ENSEEUG00000006894 I 0.782
KLF11 Felis catus ENSFCAG00000030965 I 0.782
KLF11 Homo sapiens ENSG00000172059 D 0.782
KLF11 Gorilla gorilla ENSGGOG00000012494 I 0.782
KLF11 Loxodonta africana ENSLAFG00000032182 I 0.782
KLF11 Macaca mulatta ENSMMUG00000002054 I 0.782
KLF11 Monodelphis domestica ENSMODG00000014758 I 0.782
Klf11 Mus musculus ENSMUSG00000020653 I 0.782
KLF11 Ornithorhynchus anatinus ENSOANG00000007790 I 0.782
KLF11 Oryctolagus cuniculus ENSOCUG00000003809 I 0.782
KLF11 Ochotona princeps ENSOPRG00000013425 I 0.782
ENSPANG00000008644 Papio anubis ENSPANG00000008644 I 0.782
KLF11 Procavia capensis ENSPCAG00000011366 I 0.782
ENSPPYG00000012659 Pongo abelii ENSPPYG00000012659 I 0.782
KLF11 Pan troglodytes ENSPTRG00000011645 I 0.782
Klf11 Rattus norvegicus ENSRNOG00000054259 I 0.782
ENSSHAG00000005846 Sarcophilus harrisii ENSSHAG00000005846 I 0.782
ENSSTOG00000002442 Ictidomys tridecemlineatus ENSSTOG00000002442 I 0.782
KLF11 Tursiops truncatus ENSTTRG00000017207 I 0.782
ENSXMAG00000010947 Xiphophorus maculatus ENSXMAG00000010947 I 0.782
ENSP00000307023-D1 Bos grunniens ENSP00000307023-D1 I 0.782
ENSP00000307023 Macaca fascicularis ENSP00000307023 I 0.782
Pvit_14441 Pogona vitticeps Pvit_14441 I 0.782
DAPPUDRAFT_312628 Daphnia pulex DAPPUDRAFT_312628 I 0.781
ENSMPUG00000013287 Mustela putorius furo ENSMPUG00000013287 I 0.781
ENSPFOG00000005130 Poecilia formosa ENSPFOG00000005130 I 0.781
ENSAMEG00000014775 Ailuropoda melanoleuca ENSAMEG00000014775 I 0.777
KLF10 Bos taurus ENSBTAG00000014396 I 0.777
KLF10 Canis familiaris ENSCAFG00000000638 I 0.777
KLF10 Callithrix jacchus ENSCJAG00000016069 I 0.777
KLF10 Cavia porcellus ENSCPOG00000011105 I 0.777
ENSCSAG00000011934 Chlorocebus sabaeus ENSCSAG00000011934 I 0.777
KLF10 Dasypus novemcinctus ENSDNOG00000017020 I 0.777
Klf10 Dipodomys ordii ENSDORG00000015269 I 0.777
KLF10 Equus caballus ENSECAG00000013153 I 0.777
KLF10 Erinaceus europaeus ENSEEUG00000009077 I 0.777
KLF10 Echinops telfairi ENSETEG00000016283 I 0.777
ENSFALG00000005917 Ficedula albicollis ENSFALG00000005917 I 0.777
KLF10 Felis catus ENSFCAG00000026958 I 0.777
KLF10 Homo sapiens ENSG00000155090 D 0.777
KLF10 Gorilla gorilla ENSGGOG00000015206 I 0.777
ENSLACG00000013560 Latimeria chalumnae ENSLACG00000013560 I 0.777
KLF10 Loxodonta africana ENSLAFG00000000037 I 0.777
ENSMEUG00000000662 Macropus eugenii ENSMEUG00000000662 I 0.777
ENSMICG00000002285 Microcebus murinus ENSMICG00000002285 I 0.777
KLF10 Myotis lucifugus ENSMLUG00000012969 I 0.777
KLF10 Macaca mulatta ENSMMUG00000018815 I 0.777
KLF10 Monodelphis domestica ENSMODG00000005896 I 0.777
ENSMPUG00000015132 Mustela putorius furo ENSMPUG00000015132 I 0.777
Klf10 Mus musculus ENSMUSG00000037465 I 0.777
ENSNLEG00000003646 Nomascus leucogenys ENSNLEG00000003646 I 0.777
KLF10 Ornithorhynchus anatinus ENSOANG00000013800 I 0.777
ENSOARG00000017131 Ovis aries ENSOARG00000017131 I 0.777
KLF10 Oryctolagus cuniculus ENSOCUG00000016141 I 0.777
KLF10 Otolemur garnettii ENSOGAG00000014528 I 0.777
KLF10 Ochotona princeps ENSOPRG00000006656 I 0.777
ENSPANG00000009227 Papio anubis ENSPANG00000009227 I 0.777
ENSPPYG00000018800 Pongo abelii ENSPPYG00000018800 I 0.777
ENSPSIG00000012678 Pelodiscus sinensis ENSPSIG00000012678 I 0.777
KLF10 Pan troglodytes ENSPTRG00000020484 I 0.777
KLF10 Pteropus vampyrus ENSPVAG00000013271 I 0.777
Klf10 Rattus norvegicus ENSRNOG00000006118 I 0.777
ENSSHAG00000018290 Sarcophilus harrisii ENSSHAG00000018290 I 0.777
KLF10 Sus scrofa ENSSSCG00000027480 I 0.777
ENSSSCG00000027819 Sus scrofa ENSSSCG00000027819 I 0.777
ENSSTOG00000027022 Ictidomys tridecemlineatus ENSSTOG00000027022 I 0.777
ENSTSYG00000003347 Tarsius syrichta ENSTSYG00000003347 I 0.777
KLF10 Tursiops truncatus ENSTTRG00000000383 I 0.777
Afo_R002224 Aptenodytes forsteri Afo_R002224 I 0.777
Alligator_sinensis_CCG001309.1 Alligator sinensis Alligator_sinensis_CCG001309.1 I 0.777
Brh_R008046 Buceros rhinoceros Brh_R008046 I 0.777
Cmyd_10010871 Chelonia mydas Cmyd_10010871 I 0.777
ENSBTAP00000019142-D1 Bos grunniens ENSBTAP00000019142-D1 I 0.777
ENSP00000285407 Macaca fascicularis ENSP00000285407 I 0.777
Gfo_R006024 Geospiza fortis Gfo_R006024 I 0.777
Myotis_brandtii_KLF10_10032162 Myotis brandtii Myotis_brandtii_KLF10_10032162 I 0.777
Tal_R007530 Tyto alba Tal_R007530 I 0.777
estExt_fgenesh2_pg.C_5760011 Branchiostoma floridae estExt_fgenesh2_pg.C_5760011 I 0.774
PHUM248360 Pediculus humanus PHUM248360 I 0.771
KLF11 Canis familiaris ENSCAFG00000003405 I 0.769
KLF13 Taeniopygia guttata ENSTGUG00000005470 I 0.768
Aan_R015091 Calypte anna Aan_R015091 I 0.768
Afo_R014961 Aptenodytes forsteri Afo_R014961 I 0.768
Gfo_R008822 Geospiza fortis Gfo_R008822 I 0.768
Tal_R011003 Tyto alba Tal_R011003 I 0.768
ENSDORG00000012974 Dipodomys ordii ENSDORG00000012974 I 0.766
KLF11 Otolemur garnettii ENSOGAG00000026035 I 0.766
Ogr04283 Ophisaurus gracilis Ogr04283 I 0.766
KLF11 Pteropus vampyrus ENSPVAG00000017463 I 0.765
ENSORLG00000003032 Oryzias latipes ENSORLG00000003032 N 0.764
KLF13 Echinops telfairi ENSETEG00000014330 I 0.763
ENSMEUG00000015111 Macropus eugenii ENSMEUG00000015111 I 0.762
KLF13 Callithrix jacchus ENSCJAG00000017617 I 0.760
ENSCSAG00000006853 Chlorocebus sabaeus ENSCSAG00000006853 I 0.760
KLF13 Homo sapiens ENSG00000169926 D 0.760
KLF10 Gasterosteus aculeatus ENSGACG00000004632 I 0.760
ENSGALG00000026590 Gallus gallus ENSGALG00000026590 I 0.760
KLF13 Meleagris gallopavo ENSMGAG00000004699 I 0.760
KLF13 Monodelphis domestica ENSMODG00000011740 I 0.760
Klf13 Mus musculus ENSMUSG00000052040 I 0.760
ENSNLEG00000007555 Nomascus leucogenys ENSNLEG00000007555 I 0.760
ENSOARG00000016409 Ovis aries ENSOARG00000016409 I 0.760
ENSOGAG00000026529 Otolemur garnettii ENSOGAG00000026529 I 0.760
ENSONIG00000016428 Oreochromis niloticus ENSONIG00000016428 I 0.760
KLF13 Procavia capensis ENSPCAG00000009647 I 0.760
ENSPFOG00000013334 Poecilia formosa ENSPFOG00000013334 I 0.760
KLF13 Pan troglodytes ENSPTRG00000006860 I 0.760
KLF13 Sus scrofa ENSSSCG00000026006 I 0.760
ENSSTOG00000022758 Ictidomys tridecemlineatus ENSSTOG00000022758 I 0.760
ENSXMAG00000002425 Xiphophorus maculatus ENSXMAG00000002425 I 0.760
TriadG27838 Trichoplax adhaerens TriadG27838 I 0.760
klf13 Xenopus tropicalis XB-GENE-479837 I 0.760
ENSPMAG00000001515 Petromyzon marinus ENSPMAG00000001515 I 0.758
SPU_026418 Strongylocentrotus purpuratus SPU_026418 I 0.758