Gfo_R008822 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R008822 T135790_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
KLF13
M02903_2.00 		Homo sapiens
DDRMCACGCCCCYTTNDK
MHNAARGGGGCGTGKYHH		 SELEX
Jolma et al.(2013)
KLF13_1 		0.800 0.942
KLF13
M04537_2.00 		Homo sapiens
NRCCACRCCCMCN
NGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_eDBD_HT-SELEX 		0.800 0.942
KLF13
M04539_2.00 		Homo sapiens
NRCCACRCCCMYN
NRKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_FL_HT-SELEX 		0.800 0.942
KLF13
M04538_2.00 		Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_eDBD_Methyl-HT-SELEX 		0.800 0.942
KLF13
M04540_2.00 		Homo sapiens
NRCCACRCCCMCH
DGKGGGYGTGGYN		 SELEX
Yin et al.(2017)
KLF13_FL_Methyl-HT-SELEX 		0.800 0.942
Klf9
M00777_2.00 		Mus musculus
NCCGTTAN
NTAACGGN		 PBM
Weirauch et al.(2013)
pTH2353 		0.765 0.841
KLF9
M08088_2.00 		Homo sapiens
NVMCACACCCMBN
NVKGGGTGTGKBN		 ChIP-seq
Mathelier et al.(2014)
MA1107.1 		0.765 0.841
KLF9
M08880_2.00 		Homo sapiens
NGCCMCGCCCMCBBS
SVVGKGGGCGKGGCN		 Misc
Kulakovskiy et al.(2013)
KLF9_HUMAN.H11MO.0.C 		0.765 0.841
Klf9
M10345_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BTEB1_01 		0.765 0.841
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R008822 C2H2 ZF 155 179
Gfo_R008822 C2H2 ZF 185 209
Gfo_R008822 C2H2 ZF 215 237

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

119 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
KLF13 Taeniopygia guttata ENSTGUG00000005470 I 0.827
Aan_R015091 Calypte anna Aan_R015091 I 0.827
Afo_R014961 Aptenodytes forsteri Afo_R014961 I 0.827
Tal_R011003 Tyto alba Tal_R011003 I 0.827
ENSGALG00000026590 Gallus gallus ENSGALG00000026590 I 0.820
KLF13 Meleagris gallopavo ENSMGAG00000004699 I 0.820
klf13 Xenopus tropicalis XB-GENE-479837 I 0.812
ENSACAG00000003119 Anolis carolinensis ENSACAG00000003119 I 0.804
ENSAPLG00000006681 Anas platyrhynchos ENSAPLG00000006681 I 0.804
ENSPSIG00000014849 Pelodiscus sinensis ENSPSIG00000014849 I 0.804
Ogr16901 Ophisaurus gracilis Ogr16901 I 0.804
Pvit_17363 Pogona vitticeps Pvit_17363 I 0.804
KLF13 Callithrix jacchus ENSCJAG00000017617 I 0.800
ENSCSAG00000006853 Chlorocebus sabaeus ENSCSAG00000006853 I 0.800
KLF13 Homo sapiens ENSG00000169926 D 0.800
Klf13 Mus musculus ENSMUSG00000052040 I 0.800
ENSNLEG00000007555 Nomascus leucogenys ENSNLEG00000007555 I 0.800
ENSOARG00000016409 Ovis aries ENSOARG00000016409 I 0.800
ENSOGAG00000026529 Otolemur garnettii ENSOGAG00000026529 I 0.800
KLF13 Procavia capensis ENSPCAG00000009647 I 0.800
KLF13 Pan troglodytes ENSPTRG00000006860 I 0.800
KLF13 Sus scrofa ENSSSCG00000026006 I 0.800
ENSSTOG00000022758 Ictidomys tridecemlineatus ENSSTOG00000022758 I 0.800
ENSLACG00000018298 Latimeria chalumnae ENSLACG00000018298 I 0.791
KLF13 Echinops telfairi ENSETEG00000014330 I 0.787
KLF13 Oryctolagus cuniculus ENSOCUG00000011101 I 0.787
KLF13 Monodelphis domestica ENSMODG00000011740 I 0.784
ENSAMXG00000000331 Astyanax mexicanus ENSAMXG00000000331 I 0.775
klf13 Danio rerio ENSDARG00000061368 I 0.775
ENSGACG00000010739 Gasterosteus aculeatus ENSGACG00000010739 I 0.775
ENSGMOG00000002059 Gadus morhua ENSGMOG00000002059 I 0.775
ENSLOCG00000014806 Lepisosteus oculatus ENSLOCG00000014806 I 0.775
ENSONIG00000015310 Oreochromis niloticus ENSONIG00000015310 I 0.775
klf13 Oryzias latipes ENSORLG00000007542 I 0.775
KLF11 Taeniopygia guttata ENSTGUG00000013041 I 0.774
ENSFALG00000006648 Ficedula albicollis ENSFALG00000006648 I 0.771
ENSPFOG00000004556 Poecilia formosa ENSPFOG00000004556 I 0.771
klf13 Tetraodon nigroviridis ENSTNIG00000008397 I 0.771
ENSXMAG00000003301 Xiphophorus maculatus ENSXMAG00000003301 I 0.771
DAPPUDRAFT_312628 Daphnia pulex DAPPUDRAFT_312628 I 0.770
klf13 Takifugu rubripes ENSTRUG00000011759 I 0.770
ENSOANG00000010450 Ornithorhynchus anatinus ENSOANG00000010450 I 0.768
Gfo_R015265 Geospiza fortis Gfo_R015265 I 0.768
LotgiG126249 Lottia gigantea LotgiG126249 I 0.767
NEMVEDRAFT_v1g39461 Nematostella vectensis NEMVEDRAFT_v1g39461 I 0.767
TC000837 Tribolium castaneum TC000837 I 0.767
TriadG27838 Trichoplax adhaerens TriadG27838 I 0.767
ENSAMEG00000007114 Ailuropoda melanoleuca ENSAMEG00000007114 I 0.765
KLF9 Bos taurus ENSBTAG00000016229 I 0.765
KLF9 Callithrix jacchus ENSCJAG00000001575 I 0.765
ENSCPOG00000005302 Cavia porcellus ENSCPOG00000005302 I 0.765
ENSCSAG00000008358 Chlorocebus sabaeus ENSCSAG00000008358 I 0.765
KLF9 Dasypus novemcinctus ENSDNOG00000018839 I 0.765
KLF9 Equus caballus ENSECAG00000024925 I 0.765
KLF9 Homo sapiens ENSG00000119138 D 0.765
KLF9 Gallus gallus ENSGALG00000027374 I 0.765
KLF9 Gorilla gorilla ENSGGOG00000025900 I 0.765
ENSGMOG00000017411 Gadus morhua ENSGMOG00000017411 I 0.765
ENSLACG00000004995 Latimeria chalumnae ENSLACG00000004995 I 0.765
KLF9 Loxodonta africana ENSLAFG00000027506 I 0.765
KLF9 Microcebus murinus ENSMICG00000001056 I 0.765
KLF9 Myotis lucifugus ENSMLUG00000002809 I 0.765
ENSMMUG00000000225 Macaca mulatta ENSMMUG00000000225 I 0.765
KLF9 Monodelphis domestica ENSMODG00000002760 I 0.765
ENSMPUG00000009506 Mustela putorius furo ENSMPUG00000009506 I 0.765
Klf9 Mus musculus ENSMUSG00000033863 D 0.765
ENSNLEG00000000826 Nomascus leucogenys ENSNLEG00000000826 I 0.765
KLF9 Ornithorhynchus anatinus ENSOANG00000005024 I 0.765
ENSOARG00000012896 Ovis aries ENSOARG00000012896 I 0.765
KLF9 Oryctolagus cuniculus ENSOCUG00000006343 I 0.765
KLF9 Otolemur garnettii ENSOGAG00000030356 I 0.765
ENSPANG00000025104 Papio anubis ENSPANG00000025104 I 0.765
KLF9 Procavia capensis ENSPCAG00000003811 I 0.765
ENSPPYG00000019284 Pongo abelii ENSPPYG00000019284 I 0.765
ENSPSIG00000009426 Pelodiscus sinensis ENSPSIG00000009426 I 0.765
KLF9 Pan troglodytes ENSPTRG00000040619 I 0.765
KLF9 Pteropus vampyrus ENSPVAG00000005970 I 0.765
Klf9 Rattus norvegicus ENSRNOG00000014215 I 0.765
ENSSHAG00000011337 Sarcophilus harrisii ENSSHAG00000011337 I 0.765
KLF9 Sus scrofa ENSSSCG00000021646 I 0.765
ENSSTOG00000000238 Ictidomys tridecemlineatus ENSSTOG00000000238 I 0.765
KLF9 Tupaia belangeri ENSTBEG00000007044 I 0.765
ENSTRUG00000000453 Takifugu rubripes ENSTRUG00000000453 I 0.765
ENSTSYG00000008257 Tarsius syrichta ENSTSYG00000008257 I 0.765
KLF9 Tursiops truncatus ENSTTRG00000001149 I 0.765
Alligator_sinensis_CCG010361.1 Alligator sinensis Alligator_sinensis_CCG010361.1 I 0.765
Cmyd_10017062 Chelonia mydas Cmyd_10017062 I 0.765
ENSBTAP00000021593-D1 Bos grunniens ENSBTAP00000021593-D1 I 0.765
ENSP00000366330 Macaca fascicularis ENSP00000366330 I 0.765
Myotis_brandtii_KLF9_10034438 Myotis brandtii Myotis_brandtii_KLF9_10034438 I 0.765
Ogr17781 Ophisaurus gracilis Ogr17781 I 0.765
Pvit_02178 Pogona vitticeps Pvit_02178 I 0.765
klf9 Gasterosteus aculeatus ENSGACG00000010668 I 0.761
PHUM248360 Pediculus humanus PHUM248360 I 0.760
CapteG131091 Capitella teleta CapteG131091 I 0.759
ENSAMXG00000019220 Astyanax mexicanus ENSAMXG00000019220 N 0.759
ENSLOCG00000006468 Lepisosteus oculatus ENSLOCG00000006468 I 0.759
ENSAMEG00000011355 Ailuropoda melanoleuca ENSAMEG00000011355 I 0.758
ENSAMXG00000011768 Astyanax mexicanus ENSAMXG00000011768 I 0.758
ENSAPLG00000009146 Anas platyrhynchos ENSAPLG00000009146 I 0.758
KLF11 Bos taurus ENSBTAG00000046218 I 0.758
KLF11 Canis familiaris ENSCAFG00000003405 I 0.758
klf11b Danio rerio ENSDARG00000013794 I 0.758
KLF11 Gallus gallus ENSGALG00000016440 I 0.758
ENSLACG00000010260 Latimeria chalumnae ENSLACG00000010260 I 0.758
KLF11 Meleagris gallopavo ENSMGAG00000014008 I 0.758
ENSMPUG00000013287 Mustela putorius furo ENSMPUG00000013287 I 0.758
ENSOARG00000015319 Ovis aries ENSOARG00000015319 I 0.758
ENSPSIG00000010816 Pelodiscus sinensis ENSPSIG00000010816 I 0.758
SPU_023727 Strongylocentrotus purpuratus SPU_023727 N 0.758
Aan_R015392 Calypte anna Aan_R015392 I 0.758
Afo_R015752 Aptenodytes forsteri Afo_R015752 I 0.758
Alligator_sinensis_CCG017491.1 Alligator sinensis Alligator_sinensis_CCG017491.1 I 0.758
ENSP00000307023-D1 Bos grunniens ENSP00000307023-D1 I 0.758
Tal_R013154 Tyto alba Tal_R013154 I 0.758
klf11.S Xenopus laevis XB-GENE-17345045 I 0.758
klf11 Xenopus tropicalis XB-GENE-956858 I 0.758
klf11.L Xenopus laevis XB-GENE-956865 I 0.758
tetur19g01530 Tetranychus urticae tetur19g01530 I 0.756