Alligator_sinensis_CCG003566.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG003566.1 T133029_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OVOL1
M04556_2.00 		Homo sapiens
NDDACCGTTAYNYN
NRNRTAACGGTHHN		 SELEX
Yin et al.(2017)
OVOL1_FL_HT-SELEX 		0.774 0.838
OVOL1
M08919_2.00 		Homo sapiens
WCMGTTACM
KGTAACKGW		 Misc
Kulakovskiy et al.(2013)
OVOL1_HUMAN.H11MO.0.C 		0.774 0.838
OVOL1
M04557_2.00 		Homo sapiens
NDDACCGTTAYNYN
NRNRTAACGGTHHN		 SELEX
Yin et al.(2017)
OVOL1_FL_Methyl-HT-SELEX 		0.774 0.838
Ovol1
M08974_2.00 		Mus musculus
WCMGTTACM
KGTAACKGW		 Misc
Kulakovskiy et al.(2013)
OVOL1_MOUSE.H11MO.0.C 		0.771 0.853
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003566.1 C2H2 ZF 101 122
Alligator_sinensis_CCG003566.1 C2H2 ZF 128 150
Alligator_sinensis_CCG003566.1 C2H2 ZF 156 179

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NFIA_114690 Neosartorya fischeri CADNFIAG00010576 N
Pc21g12280 Penicillium chrysogenum Pc21g12280 N
PCH_Pc21g12280 Penicillium rubens PCH_Pc21g12280 N
PDE_05896 Penicillium oxalicum PDE_05896 N