Alligator_sinensis_CCG003566.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG003566.1 T133029_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OVOL1
M04556_2.00 		Homo sapiens
NDDACCGTTAYNYN
NRNRTAACGGTHHN		 SELEX
Yin et al.(2017)
OVOL1_FL_HT-SELEX 		0.774 0.838
OVOL1
M08919_2.00 		Homo sapiens
WCMGTTACM
KGTAACKGW		 Misc
Kulakovskiy et al.(2013)
OVOL1_HUMAN.H11MO.0.C 		0.774 0.838
OVOL1
M04557_2.00 		Homo sapiens
NDDACCGTTAYNYN
NRNRTAACGGTHHN		 SELEX
Yin et al.(2017)
OVOL1_FL_Methyl-HT-SELEX 		0.774 0.838
Ovol1
M08974_2.00 		Mus musculus
WCMGTTACM
KGTAACKGW		 Misc
Kulakovskiy et al.(2013)
OVOL1_MOUSE.H11MO.0.C 		0.771 0.853
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG003566.1 C2H2 ZF 101 122
Alligator_sinensis_CCG003566.1 C2H2 ZF 128 150
Alligator_sinensis_CCG003566.1 C2H2 ZF 156 179

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

37 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000002913 Pelodiscus sinensis ENSPSIG00000002913 I 0.778
OVOL1 Homo sapiens ENSG00000172818 D 0.774
Ovol1 Mus musculus ENSMUSG00000024922 D 0.771
ENSPANG00000002371 Papio anubis ENSPANG00000002371 I 0.770
ENSPPYG00000003049 Pongo abelii ENSPPYG00000003049 I 0.770
OVOL1 Otolemur garnettii ENSOGAG00000016496 I 0.770
ENSOARG00000017840 Ovis aries ENSOARG00000017840 I 0.770
ENSAMEG00000017343 Ailuropoda melanoleuca ENSAMEG00000017343 I 0.770
OVOL1 Ornithorhynchus anatinus ENSOANG00000015786 I 0.770
Myotis_brandtii_OVOL1_10030735 Myotis brandtii Myotis_brandtii_OVOL1_10030735 I 0.770
OVOL1 Pan troglodytes ENSPTRG00000003893 I 0.770
OVOL1 Tursiops truncatus ENSTTRG00000016929 I 0.770
ENSXMAG00000009866 Xiphophorus maculatus ENSXMAG00000009866 I 0.770
ENSSTOG00000003150 Ictidomys tridecemlineatus ENSSTOG00000003150 I 0.770
OVOL1 Sus scrofa ENSSSCG00000027361 I 0.770
Ovol1 Rattus norvegicus ENSRNOG00000020669 I 0.770
ENSP00000337862 Macaca fascicularis ENSP00000337862 I 0.770
ENSNLEG00000005840 Nomascus leucogenys ENSNLEG00000005840 I 0.770
ENSCSAG00000007998 Chlorocebus sabaeus ENSCSAG00000007998 I 0.770
OVOL1 Equus caballus ENSECAG00000017302 I 0.770
ENSMPUG00000011594 Mustela putorius furo ENSMPUG00000011594 I 0.770
ENSCPOG00000000009 Cavia porcellus ENSCPOG00000000009 I 0.770
OVOL1 Callithrix jacchus ENSCJAG00000001957 I 0.770
OVOL1 Bos taurus ENSBTAG00000012656 I 0.770
OVOL1 Canis familiaris ENSCAFG00000013285 I 0.770
OVOL1 Gorilla gorilla ENSGGOG00000008101 I 0.770
OVOL1 Felis catus ENSFCAG00000007902 I 0.770
OVOL1 Macaca mulatta ENSMMUG00000012585 I 0.770
OVOL1 Monodelphis domestica ENSMODG00000009534 I 0.770
ENSMICG00000013034 Microcebus murinus ENSMICG00000013034 I 0.770
OVOL1 Myotis lucifugus ENSMLUG00000008789 I 0.770
OVOL1 Loxodonta africana ENSLAFG00000015644 I 0.770
ENSMEUG00000008765 Macropus eugenii ENSMEUG00000008765 I 0.770
ENSPSIG00000011563 Pelodiscus sinensis ENSPSIG00000011563 N 0.757
Cmyd_10005565 Chelonia mydas Cmyd_10005565 N 0.757
e_gw.374.48.1 Branchiostoma floridae e_gw.374.48.1 I 0.756
e_gw.236.92.1 Branchiostoma floridae e_gw.236.92.1 I 0.756