Alligator_sinensis_CCG005558.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG005558.1 T133137_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF282
M02904_2.00 		Homo sapiens
BTTTCCCMYAACACKNN
NNMGTGTTRKGGGAAAV		 SELEX
Jolma et al.(2013)
ZNF282_1 		0.762 0.809
ZNF282
M04541_2.00 		Homo sapiens
NHTCCCMYNACMCK
MGKGTNRKGGGADN		 SELEX
Yin et al.(2017)
ZNF282_eDBD_HT-SELEX 		0.762 0.809
ZNF282
M05849_2.00 		Homo sapiens
HMTCCCRCMCC
GGKGYGGGAKD		 SMiLE-seq
Isakova et al.(2017)
ZNF282 		0.762 0.809
ZNF282
M07626_2.00 		Homo sapiens
CTCCCS
SGGGAG		 ChIP-seq+ChIP-exo
Barazandeh et al.(2018)
ZNF282.RCADE.ReprocessedData 		0.762 0.809
ZNF282
M04542_2.00 		Homo sapiens
HWTCCCMYVACMCN
NGKGTBRKGGGAWD		 SELEX
Yin et al.(2017)
ZNF282_eDBD_Methyl-HT-SELEX 		0.762 0.809
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG005558.1 C2H2 ZF 475 497
Alligator_sinensis_CCG005558.1 C2H2 ZF 503 525
Alligator_sinensis_CCG005558.1 C2H2 ZF 531 553
Alligator_sinensis_CCG005558.1 C2H2 ZF 559 581
Alligator_sinensis_CCG005558.1 C2H2 ZF 587 609

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000018909 Astyanax mexicanus ENSAMXG00000018909 N 0.000
ENSGMOG00000000522 Gadus morhua ENSGMOG00000000522 N 0.000
ENSLOCG00000004501 Lepisosteus oculatus ENSLOCG00000004501 N 0.000
ENSONIG00000004211 Oreochromis niloticus ENSONIG00000004211 N 0.000
ENSPFOG00000004878 Poecilia formosa ENSPFOG00000004878 N 0.000
ENSXMAG00000016004 Xiphophorus maculatus ENSXMAG00000016004 N 0.000
si:zfos-1425h8.1 Gasterosteus aculeatus ENSGACG00000006496 N 0.000
si:zfos-1425h8.1 Oryzias latipes ENSORLG00000016031 N 0.000
si:zfos-1425h8.1 Tetraodon nigroviridis ENSTNIG00000016437 N 0.000
si:zfos-1425h8.1 Takifugu rubripes ENSTRUG00000014740 N 0.000