Brh_R010628 (Buceros rhinoceros)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Brh_R010628 T133639_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PATZ1
M08287_2.00 		Homo sapiens
CCCCDCCC
GGGHGGGG		 ChIP-seq
Schmitges et al.(2016)
Q9HBE1.MEME 		0.825 0.993
PATZ1
M08864_2.00 		Homo sapiens
NYBCHNBYBCMKYCYCYBCCMY
RKGGVRGRGRMKGVRVNDGVRN		 Misc
Kulakovskiy et al.(2013)
PATZ1_HUMAN.H11MO.0.C 		0.825 0.993
PATZ1
M10137_2.00 		Homo sapiens
NDDCCCCCCCCSH
DSGGGGGGGGHHN		 Transfac
Matys et al.(2006)
V$MAZR_01 		0.825 0.993
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R010628 C2H2 ZF 142 164
Brh_R010628 C2H2 ZF 206 227
Brh_R010628 C2H2 ZF 233 255
Brh_R010628 C2H2 ZF 263 286
Brh_R010628 C2H2 ZF 292 314
Brh_R010628 C2H2 ZF 346 368

Links

Other C2H2 ZF family TFs
Other Buceros rhinoceros TFs

36 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29417.m000034 Ricinus communis 29417.m000034 N
AT1G31040 Arabidopsis thaliana AT1G31040 N
BGIOSGA023427 Oryza indica BGIOSGA023427 N
Bo7g041160 Brassica oleracea Bo7g041160 N
Bostr.15697s0409 Boechera stricta Bostr.15697s0409 N
Bra014899 Brassica rapa Bra014899 N
BRADI1G32050 Brachypodium distachyon BRADI1G32050 N
BRADI3G05380 Brachypodium distachyon BRADI3G05380 N
Cagra.1508s0089 Capsella grandiflora Cagra.1508s0089 N
Carubv10011663m.g Capsella rubella Carubv10011663m.g N
cassava11490.m1 Manihot esculenta cassava11490.m1 N
Ciclev10016385m.g Citrus clementina Ciclev10016385m.g N
fgenesh1_pm.C_scaffold_1002523 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002523 N
GSMUA_Achr6G20140_001 Musa acuminata GSMUA_Achr6G20140_001 N
GSMUA_Achr7G03600_001 Musa acuminata GSMUA_Achr7G03600_001 N
GSMUA_Achr8G33510_001 Musa acuminata GSMUA_Achr8G33510_001 N
GSMUA_Achr9G30790_001 Musa acuminata GSMUA_Achr9G30790_001 N
GSMUA_AchrUn_randomG23740_001 Musa acuminata GSMUA_AchrUn_randomG23740_001 N
LjSGA_033751.1 Lotus japonicus LjSGA_033751.1 N
LPERR06G19930 Leersia perrieri LPERR06G19930 N
MLOC_21744 Hordeum vulgare MLOC_21744 N
OB02G14750 Oryza brachyantha OB02G14750 N
OBART06G24000 Oryza barthii OBART06G24000 N
OGLUM06G25260 Oryza glumaepatula OGLUM06G25260 N
OLONG_011712 Oryza longistaminata OLONG_011712 N
OMERI06G23930 Oryza meridionalis OMERI06G23930 N
ONIVA03G43780 Oryza nivara ONIVA03G43780 N
OPUNC02G04680 Oryza punctata OPUNC02G04680 N
OPUNC06G21750 Oryza punctata OPUNC06G21750 N
orange1.1g048158m.g Citrus sinensis orange1.1g048158m.g N
ORGLA06G0201700 Oryza glaberrima ORGLA06G0201700 N
OS06G0666100 Oryza sativa OS06G0666100 N
Pavir.Aa03378 Panicum virgatum Pavir.Aa03378 N
Pavir.Ab00578 Panicum virgatum Pavir.Ab00578 N
PDK_20s1530701g001 Phoenix dactylifera PDK_20s1530701g001 N
POPTR_0001s15920 Populus trichocarpa POPTR_0001s15920 N
POPTR_0003s07310 Populus trichocarpa POPTR_0003s07310 N
SapurV1A.0104s0310 Salix purpurea SapurV1A.0104s0310 N
SapurV1A.0210s0200 Salix purpurea SapurV1A.0210s0200 N
Sb04g004830 Sorghum bicolor Sb04g004830 N
Sb10g026620 Sorghum bicolor Sb10g026620 N
Si018139m.g Setaria italica Si018139m.g N
Solyc02g068510.1 Solanum lycopersicum Solyc02g068510.1 N
TCM_006017 Theobroma cacao TCM_006017 N
Traes_6BS_4DA724E79 Triticum aestivum Traes_6BS_4DA724E79 N
Traes_7AL_5E9E6A334 Triticum aestivum Traes_7AL_5E9E6A334 N
Traes_7DL_B446D4CC6 Triticum aestivum Traes_7DL_B446D4CC6 N
TRIUR3_33737 Triticum urartu TRIUR3_33737 N
VIT_01s0011g01410 Vitis vinifera VIT_01s0011g01410 N