Cmyd_10010560 (Chelonia mydas)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Cmyd_10010560 T134349_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BCL6
M00228_2.00 		Homo sapiens
NNVNDVRANN
NNTYBHNBNN		 PBM
Barrera et al.(2016)
BCL6_REF 		0.825 0.986
BCL6
M04424_2.00 		Homo sapiens
NYGCTTTCKAGGAAHN
NDTTCCTMGAAAGCRN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_1 		0.825 0.986
BCL6
M04425_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_HT-SELEX_2 		0.825 0.986
Bcl6
M08097_2.00 		Mus musculus
NDCYYTCYAGGAAN
NTTCCTRGARRGHN		 ChIP-seq
Mathelier et al.(2014)
MA0463.1 		0.825 0.986
Bcl6
M08024_2.00 		Mus musculus
HYNBHHWBWSHTCHYNYYYYYYNBYYHYYH
DRRDRRVNRRRRRRNRDGADSWVWDDVNRD		 ChIP-seq
Chen et al.(2011)
SRP001843_Bcl6_IgG_LPSstim 		0.825 0.986
BCL6
M08877_2.00 		Homo sapiens
NNMYYTCYAGGAA
TTCCTRGARRKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_HUMAN.H11MO.0.A 		0.825 0.986
Bcl6
M08972_2.00 		Mus musculus
NNMTYTCYAGGAA
TTCCTRGARAKNN		 Misc
Kulakovskiy et al.(2013)
BCL6_MOUSE.H11MO.0.A 		0.825 0.986
Bcl6
M09513_2.00 		Mus musculus
NNNNYTTCYWGGAAN
NTTCCWRGAARNNNN		 Misc
Heinz et al.(2010)
Liver-Bcl6_GSE31578 		0.825 0.986
BCL6
M10180_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_01 		0.825 0.986
BCL6
M10181_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_02 		0.825 0.986
BCL6
M10182_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3_01 		0.825 0.986
BCL6
M10183_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q3 		0.825 0.986
BCL6
M10184_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$BCL6_Q6 		0.825 0.986
BCL6
M04426_2.00 		Homo sapiens
NTGCTTTCTAGGAAHN
NDTTCCTAGAAAGCAN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_1 		0.825 0.986
BCL6
M04427_2.00 		Homo sapiens
NDTTCCTMGAWWRCVN
NBGYWWTCKAGGAAHN		 SELEX
Yin et al.(2017)
BCL6_eDBD_Methyl-HT-SELEX_2 		0.825 0.986
BCL6
M00227_2.00 		Homo sapiens
NTAATTRWNN
NNWYAATTAN		 PBM
Barrera et al.(2016)
BCL6_H676Y 		0.819 0.949
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10010560 C2H2 ZF 516 539
Cmyd_10010560 C2H2 ZF 544 566
Cmyd_10010560 C2H2 ZF 572 594
Cmyd_10010560 C2H2 ZF 600 622
Cmyd_10010560 C2H2 ZF 628 650
Cmyd_10010560 C2H2 ZF 656 679

Links

Other C2H2 ZF family TFs
Other Chelonia mydas TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACAC_0000967001 Angiostrongylus cantonensis ACAC_0000967001 N 0.000
ACEP10767 Atta cephalotes ACEP10767 N 0.000
ACOC_0001090601 Angiostrongylus costaricensis ACOC_0001090601 N 0.000
ACUA011690 Anopheles culicifacies ACUA011690 N 0.000
AGAP000061 Anopheles gambiae AGAP000061 I 0.000
Alligator_sinensis_CCG000427.1 Alligator sinensis Alligator_sinensis_CCG000427.1 N 0.000
AMAM006920 Anopheles maculatus AMAM006920 N 0.000
ANCCAN_18993 Ancylostoma caninum ANCCAN_18993 N 0.000
ANCCEY_09797 Ancylostoma ceylanicum ANCCEY_09797 N 0.000
ANCDUO_16051 Ancylostoma duodenale ANCDUO_16051 N 0.000
BGIBMGA013353 Bombyx mori BGIBMGA013353 N 0.000
BGLB010771 Biomphalaria glabrata BGLB010771 N 0.000
Bm2283 Brugia malayi Bm2283 N 0.000
BTMF_0001093101 Brugia timori BTMF_0001093101 N 0.000
Cflo_07825--XP_624996.2_APIME Camponotus floridanus Cflo_07825--XP_624996.2_APIME N 0.000
CLEC007920 Cimex lectularius CLEC007920 N 0.000
Cmyd_10006709 Chelonia mydas Cmyd_10006709 N 0.000
Cmyd_10009028 Chelonia mydas Cmyd_10009028 N 0.000
Cmyd_10014202 Chelonia mydas Cmyd_10014202 N 0.000
D915_04001 Fasciola hepatica D915_04001 N 0.000
D917_03504 Trichinella nativa D917_03504 N 0.000
D918_08254 Trichuris suis D918_08254 N 0.000
DME_0000267401 Dracunculus medinensis DME_0000267401 N 0.000
ECPE_0000369101 Echinostoma caproni ECPE_0000369101 N 0.000
EEL_0001075201 Elaeophora elaphi EEL_0001075201 N 0.000
EFV46387 Trichinella spiralis EFV46387 N 0.000
EFV55311 Trichinella spiralis EFV55311 N 0.000
ENSDORG00000002300 Dipodomys ordii ENSDORG00000002300 N 0.000
ENSGMOG00000012508 Gadus morhua ENSGMOG00000012508 N 0.000
ENSOANG00000004576 Ornithorhynchus anatinus ENSOANG00000004576 N 0.000
ENSPMAG00000007938 Petromyzon marinus ENSPMAG00000007938 N 0.000
ENSSHAG00000014706 Sarcophilus harrisii ENSSHAG00000014706 N 0.000
ENSSHAG00000018152 Sarcophilus harrisii ENSSHAG00000018152 I 0.000
ENSTNIG00000001531 Tetraodon nigroviridis ENSTNIG00000001531 N 0.000
ENSTNIG00000003240 Tetraodon nigroviridis ENSTNIG00000003240 N 0.000
ENSTRUG00000003652 Takifugu rubripes ENSTRUG00000003652 N 0.000
ENSXMAG00000012192 Xiphophorus maculatus ENSXMAG00000012192 N 0.000
EVEC_0000948201 Enterobius vermicularis EVEC_0000948201 N 0.000
GD24376 Drosophila simulans FBgn0195717 N 0.000
GPUH_0000805401 Gongylonema pulchrum GPUH_0000805401 N 0.000
GPUH_0001951401 Gongylonema pulchrum GPUH_0001951401 N 0.000
gw.66.200.1 Branchiostoma floridae gw.66.200.1 N 0.000
HHAL003723-PA Halyomorpha halys HHAL003723-PA N 0.000
HPLM_0000364001 Haemonchus placei HPLM_0000364001 N 0.000
ISCW015628 Ixodes scapularis ISCW015628 N 0.000
L798_07541 Zootermopsis nevadensis L798_07541 N 0.000
L889_g23716 Steinernema feltiae L889_g23716 I 0.000
L892_g9685 Steinernema scapterisci L892_g9685 N 0.000
L898_g28854 Steinernema monticolum L898_g28854 I 0.000
LCUP017328 Lucilia cuprina LCUP017328 N 0.000
LDEC016076 Leptinotarsa decemlineata LDEC016076 N 0.000
MCINX014974 Melitaea cinxia MCINX014974 N 0.000
MCOS_0000769501 Mesocestoides corti MCOS_0000769501 N 0.000
Myotis_brandtii_Onecut1_10025993 Myotis brandtii Myotis_brandtii_Onecut1_10025993 N 0.000
nAv.1.0.1.g00656 Acanthocheilonema viteae nAv.1.0.1.g00656 N 0.000
NBR_0001501501 Nippostrongylus brasiliensis NBR_0001501501 N 0.000
NECAME_16148 Necator americanus NECAME_16148 N 0.000
nOo.2.0.1.g05355 Onchocerca ochengi nOo.2.0.1.g05355 N 0.000
nOo.2.0.1.g07179 Onchocerca ochengi nOo.2.0.1.g07179 N 0.000
nRc.2.0.1.g06026 Romanomermis culicivorax nRc.2.0.1.g06026 N 0.000
Ocbimv22034219m.g Octopus bimaculoides Ocbimv22034219m.g N 0.000
OESDEN_04593 Oesophagostomum dentatum OESDEN_04593 N 0.000
OFLC_0001427401 Onchocerca flexuosa OFLC_0001427401 N 0.000
Ogr15245 Ophisaurus gracilis Ogr15245 N 0.000
onecut1 Takifugu rubripes ENSTRUG00000000994 N 0.000
ONECUT1 Pan troglodytes ENSPTRG00000007090 I 0.000
ONECUT1 Homo sapiens ENSG00000169856 D 0.000
ONECUT2 Sus scrofa ENSSSCG00000004540 N 0.000
onecut2 Xenopus tropicalis XB-GENE-485246 N 0.000
ONECUT3 Canis familiaris ENSCAFG00000019469 N 0.000
PPA07282 Pristionchus pacificus PPA07282 N 0.000
PXEA_0001210701 Protopolystoma xenopodis PXEA_0001210701 N 0.000
RPRC001057 Rhodnius prolixus RPRC001057 N 0.000
scaffold144-EXSNAP2012.47 Pristionchus exspectatus scaffold144-EXSNAP2012.47 N 0.000
SINV23673 Solenopsis invicta SINV23673 N 0.000
SMRZ_0001320201 Schistosoma margrebowiei SMRZ_0001320201 N 0.000
SMTD_0000822401 Schistosoma mattheei SMTD_0000822401 N 0.000
SMUV_0001096901 Syphacia muris SMUV_0001096901 N 0.000
SNAPOd2T00024998001 Oikopleura dioica SNAPOd2T00024998001 N 0.000
SROB_0001256401 Schistosoma rodhaini SROB_0001256401 N 0.000
SVUK_0000254701 Strongylus vulgaris SVUK_0000254701 N 0.000
WBGene00240888 Onchocerca volvulus WBGene00240888 N 0.000