ENSBTAP00000019345-D1 (Bos grunniens)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 ENSBTAP00000019345-D1 T134581_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SNAI1
M04441_2.00 		Homo sapiens
NVCACCTGYN
NRCAGGTGBN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_HT-SELEX 		0.819 0.945
SNAI1
M04443_2.00 		Homo sapiens
TRCACCTGYN
NRCAGGTGYA		 SELEX
Yin et al.(2017)
SNAI1_FL_HT-SELEX 		0.819 0.945
SNAI1
M08303_2.00 		Homo sapiens
NNNNGCACCTGCYNB
VNRGCAGGTGCNNNN		 ChIP-seq
Schmitges et al.(2016)
O95863.MEME 		0.819 0.945
SNAI1
M08886_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_HUMAN.H11MO.0.C 		0.819 0.945
SNAI1
M10201_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q4 		0.819 0.945
SNAI1
M10202_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SNA_Q6 		0.819 0.945
SNAI1
M04442_2.00 		Homo sapiens
NRCACCTGYN
NRCAGGTGYN		 SELEX
Yin et al.(2017)
SNAI1_eDBD_Methyl-HT-SELEX 		0.819 0.945
SNAI1
M04444_2.00 		Homo sapiens
YRCACCTGYN
NRCAGGTGYR		 SELEX
Yin et al.(2017)
SNAI1_FL_Methyl-HT-SELEX 		0.819 0.945
Snai1
M00781_2.00 		Mus musculus
NNNTGTCANN
NNTGACANNN		 PBM
Weirauch et al.(2013)
pTH2340 		0.816 0.923
Snai1
M09002_2.00 		Mus musculus
VCACCTGB
VCAGGTGB		 Misc
Kulakovskiy et al.(2013)
SNAI1_MOUSE.H11MO.0.C 		0.816 0.923
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSBTAP00000019345-D1 C2H2 ZF 154 176
ENSBTAP00000019345-D1 C2H2 ZF 180 202
ENSBTAP00000019345-D1 C2H2 ZF 208 230
ENSBTAP00000019345-D1 C2H2 ZF 236 257

Links

Other C2H2 ZF family TFs
Other Bos grunniens TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27494.m000044 Ricinus communis 27494.m000044 I
BME3-ZF Arabidopsis lyrata fgenesh2_kg.5__1883__AT3G54810.2 I
BME3-ZF Vitis vinifera VIT_13s0019g04390 I
Bo4g118340 Brassica oleracea Bo4g118340 I
Bo8g085930 Brassica oleracea Bo8g085930 I
Bostr.0697s0095 Boechera stricta Bostr.0697s0095 I
Bra007099 Brassica rapa Bra007099 I
Cagra.1742s0041 Capsella grandiflora Cagra.1742s0041 I
Carubv10017647m.g Capsella rubella Carubv10017647m.g I
cassava37880.valid.m1 Manihot esculenta cassava37880.valid.m1 I
Ca_08487 Cicer arietinum Ca_08487 I
Ciclev10032018m.g Citrus clementina Ciclev10032018m.g I
Cucsa.308400 Cucumis sativus Cucsa.308400 I
Eucgr.G02840 Eucalyptus grandis Eucgr.G02840 I
evm.TU.supercontig_546.1 Carica papaya evm.TU.supercontig_546.1 I
GATA8 Arabidopsis thaliana AT3G54810 D
GLYMA10G35470 Glycine max GLYMA10G35470 I
GLYMA20G32050 Glycine max GLYMA20G32050 I
Gorai.009G313700 Gossypium raimondii Gorai.009G313700 I
Gorai.011G238800 Gossypium raimondii Gorai.011G238800 I
LPERR05G19030 Leersia perrieri LPERR05G19030 I
MDP0000243535 Malus domestica MDP0000243535 I
MTR_1g094930 Medicago truncatula MTR_1g094930 I
orange1.1g016706m.g Citrus sinensis orange1.1g016706m.g I
POPTR_0008s03880 Populus trichocarpa POPTR_0008s03880 I
POPTR_0010s23010 Populus trichocarpa POPTR_0010s23010 I
SapurV1A.0518s0130 Salix purpurea SapurV1A.0518s0130 I
SapurV1A.0657s0040 Salix purpurea SapurV1A.0657s0040 I
TCM_043158 Theobroma cacao TCM_043158 I
Thhalv10010544m.g Eutrema salsugineum Thhalv10010544m.g I