Ogr09401 (Ophisaurus gracilis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ogr09401 T136641_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.825 0.993
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.825 0.993
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.825 0.993
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.825 0.993
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.825 0.993
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.825 0.993
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.825 0.993
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.825 0.993
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.823 0.986
GFI1
M00237_2.00 		Homo sapiens
ATATCAVD
HBTGATAT		 PBM
Barrera et al.(2016)
GFI1_N382S 		0.789 0.986
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.782 0.884
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.782 0.884
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.782 0.884
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.782 0.884
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.782 0.884
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.782 0.884
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.782 0.884
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.782 0.884
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.782 0.884
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.774 0.848
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.772 0.877
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ogr09401 C2H2 ZF 233 256
Ogr09401 C2H2 ZF 262 284
Ogr09401 C2H2 ZF 290 312
Ogr09401 C2H2 ZF 318 340
Ogr09401 C2H2 ZF 346 368
Ogr09401 C2H2 ZF 374 397

Links

Other C2H2 ZF family TFs
Other Ophisaurus gracilis TFs

136 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000165301 Angiostrongylus costaricensis ACOC_0000165301 N
ALUE_0000981201 Ascaris lumbricoides ALUE_0000981201 N
ANCCAN_08298 Ancylostoma caninum ANCCAN_08298 N
ANCCEY_06495 Ancylostoma ceylanicum ANCCEY_06495 N
ANCDUO_13479 Ancylostoma duodenale ANCDUO_13479 N
ASIM_0001210001 Anisakis simplex ASIM_0001210001 N
ASIM_0001432701 Anisakis simplex ASIM_0001432701 N
ASU_03242 Ascaris suum ASU_03242 N
Bm3947 Brugia malayi Bm3947 N
BTMF_0000795401 Brugia timori BTMF_0000795401 N
CBG12345 Caenorhabditis briggsae CBG12345 N
CRE29744 Caenorhabditis remanei CRE29744 N
DICVIV_11308 Dictyocaulus viviparus DICVIV_11308 N
DME_0000578001 Dracunculus medinensis DME_0000578001 N
EEL_0000453801 Elaeophora elaphi EEL_0000453801 N
Hba_19518 Heterorhabditis bacteriophora Hba_19518 N
HCOI00597600 Haemonchus contortus HCOI00597600 N
HPBE_0000675601 Heligmosomoides bakeri HPBE_0000675601 N
LOAG_02128 Loa loa LOAG_02128 N
nDi.2.2.2.g05314 Dirofilaria immitis nDi.2.2.2.g05314 N
nLs.2.1.2.g03126 Litomosoides sigmodontis nLs.2.1.2.g03126 N
OESDEN_02210 Oesophagostomum dentatum OESDEN_02210 N
OFLC_0000425901 Onchocerca flexuosa OFLC_0000425901 N
Ppa-tlf-1 Pristionchus pacificus PPA12059 N
TCLT_0000474901 Thelazia callipaeda TCLT_0000474901 N
TCNE_0000853601 Toxocara canis TCNE_0000853601 N
tlf-1 Caenorhabditis elegans WBGene00006577 N
WBGene00238395 Onchocerca volvulus WBGene00238395 N
WUBG_01280 Wuchereria bancrofti WUBG_01280 N