Pm025274 (Prunus mume)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pm025274 T136825_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SGR5
M06805_2.00 		Arabidopsis thaliana
WTTTTGTCTTWTHYD
HRDAWAAGACAAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_col_a 		0.806 0.952
SGR5
M06806_2.00 		Arabidopsis thaliana
WTTTGTCTYWWHBNN
NNVDWWRAGACAAAW		 Dap-seq
OMalley et al.(2016)
SGR5_colamp_a 		0.806 0.952
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm025274 C2H2 ZF 132 153
Pm025274 C2H2 ZF 153 178

Links

Other C2H2 ZF family TFs
Other Prunus mume TFs

123 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC193786.3_FG005 Zea mays AC193786.3_FG005 N 0.000
BGIOSGA000097 Oryza indica BGIOSGA000097 N 0.000
BGIOSGA005178 Oryza indica BGIOSGA005178 N 0.000
BRADI2G60970 Brachypodium distachyon BRADI2G60970 N 0.000
BRADI2G61050 Brachypodium distachyon BRADI2G61050 N 0.000
BRADI3G43250 Brachypodium distachyon BRADI3G43250 N 0.000
F775_19529 Aegilops tauschii F775_19529 N 0.000
F775_31854 Aegilops tauschii F775_31854 N 0.000
GRMZM2G057413 Zea mays GRMZM2G057413 N 0.000
LPERR01G38470 Leersia perrieri LPERR01G38470 N 0.000
MLOC_36351 Hordeum vulgare MLOC_36351 N 0.000
MLOC_67053 Hordeum vulgare MLOC_67053 N 0.000
MLOC_72280 Hordeum vulgare MLOC_72280 N 0.000
OB01G53300 Oryza brachyantha OB01G53300 N 0.000
OBART01G44150 Oryza barthii OBART01G44150 N 0.000
OGLUM01G48440 Oryza glumaepatula OGLUM01G48440 N 0.000
OLONG_006457 Oryza longistaminata OLONG_006457 N 0.000
OMERI01G40940 Oryza meridionalis OMERI01G40940 N 0.000
ONIVA01G50120 Oryza nivara ONIVA01G50120 N 0.000
OPUNC01G43070 Oryza punctata OPUNC01G43070 N 0.000
ORUFI01G47560 Oryza rufipogon ORUFI01G47560 N 0.000
OS01G0952800 Oryza sativa OS01G0952800 N 0.000
Pavir.Ea04053 Panicum virgatum Pavir.Ea04053 N 0.000
Pavir.J04771 Panicum virgatum Pavir.J04771 N 0.000
Sb03g046090 Sorghum bicolor Sb03g046090 N 0.000
Si002720m.g Setaria italica Si002720m.g N 0.000
TRAES3BF136000020CFD_g Triticum aestivum TRAES3BF136000020CFD_g N 0.000
Traes_2AL_ACBAA6A31 Triticum aestivum Traes_2AL_ACBAA6A31 N 0.000
Traes_2BL_00608F8D6 Triticum aestivum Traes_2BL_00608F8D6 N 0.000
Traes_2DL_865346DA2 Triticum aestivum Traes_2DL_865346DA2 N 0.000
Traes_3AL_95403ABBA Triticum aestivum Traes_3AL_95403ABBA N 0.000
TRIUR3_18175 Triticum urartu TRIUR3_18175 N 0.000
TRIUR3_22165 Triticum urartu TRIUR3_22165 N 0.000