Tal_R009708 (Tyto alba)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Tal_R009708 T137684_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PRDM4
M02881_2.00 		Homo sapiens
TTTCAAGGCCCCC
GGGGGCCTTGAAA		 SELEX
Jolma et al.(2013)
PRDM4_1 		0.821 0.971
PRDM4
M04421_2.00 		Homo sapiens
YRRCNGTTTCAAGKCYMCCC
GGGKRGMCTTGAAACNGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_HT-SELEX 		0.821 0.971
PRDM4
M04422_2.00 		Homo sapiens
YRGCRGTTTCRAGGSTTVCC
GGBAASCCTYGAAACYGCYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_1 		0.821 0.971
PRDM4
M04423_2.00 		Homo sapiens
YRRCRGTTTCRAGKSYNCCC
GGGNRSMCTYGAAACYGYYR		 SELEX
Yin et al.(2017)
PRDM4_eDBD_Methyl-HT-SELEX_2 		0.821 0.971
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Tal_R009708 C2H2 ZF 587 609
Tal_R009708 C2H2 ZF 615 637
Tal_R009708 C2H2 ZF 643 665
Tal_R009708 C2H2 ZF 671 693
Tal_R009708 C2H2 ZF 699 721
Tal_R009708 C2H2 ZF 727 748

Links

Other C2H2 ZF family TFs
Other Tyto alba TFs

53 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000012133 Astyanax mexicanus ENSAMXG00000012133 I 0.000
ENSLACG00000016334 Latimeria chalumnae ENSLACG00000016334 I 0.000
ENSLOCG00000006120 Lepisosteus oculatus ENSLOCG00000006120 I 0.000
ENSMEUG00000000224 Macropus eugenii ENSMEUG00000000224 I 0.000
ENSONIG00000012590 Oreochromis niloticus ENSONIG00000012590 I 0.000
ENSPFOG00000005824 Poecilia formosa ENSPFOG00000005824 I 0.000
ENSXMAG00000013359 Xiphophorus maculatus ENSXMAG00000013359 I 0.000
naif1 Danio rerio ENSDARG00000062753 I 0.000
naif1 Gasterosteus aculeatus ENSGACG00000018458 I 0.000
NAIF1 Monodelphis domestica ENSMODG00000005695 I 0.000
naif1 Oryzias latipes ENSORLG00000018283 I 0.000
naif1 Tetraodon nigroviridis ENSTNIG00000002538 I 0.000
naif1 Takifugu rubripes ENSTRUG00000013589 I 0.000
naif1 Xenopus tropicalis XB-GENE-986890 D 0.000
naif1.S Xenopus laevis XB-GENE-986896 D 0.000