e_gw.11.853.1 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 e_gw.11.853.1 T138011_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GFI1
M00238_2.00 		Homo sapiens
NWAWMNNNN
NNNNKWTWN		 PBM
Barrera et al.(2016)
GFI1_REF 		0.784 0.870
GFI1
M04507_2.00 		Homo sapiens
BMAATCACDGCNHBBCACTMN
NKAGTGVVDNGCHGTGATTKV		 SELEX
Yin et al.(2017)
GFI1_eDBD_HT-SELEX 		0.784 0.870
Gfi1
M02668_2.00 		Rattus norvegicus
NMAATCWVHS
SDBWGATTKN		 SELEX
Mathelier et al.(2014)
MA0038.1 		0.784 0.870
GFI1
M08905_2.00 		Homo sapiens
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_HUMAN.H11MO.0.C 		0.784 0.870
Gfi1
M08984_2.00 		Mus musculus
MAATCWSWGY
RCWSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1_MOUSE.H11MO.0.C 		0.784 0.870
GFI1
M10235_2.00 		Homo sapiens
NNNNNNNRCHSWGATTTDNNBNNN
NNNVNNHAAATCWSDGYNNNNNNN		 Transfac
Matys et al.(2006)
V$GFI1_01 		0.784 0.870
GFI1
M10236_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1_Q6_01 		0.784 0.870
GFI1
M00236_2.00 		Homo sapiens
NAATMNNNN
NNNNKATTN		 PBM
Barrera et al.(2016)
GFI1_L400F 		0.784 0.870
GFI1
M04508_2.00 		Homo sapiens
NNAGTGVVNHGCWSTGATTKV
BMAATCASWGCDNBBCACTNN		 SELEX
Yin et al.(2017)
GFI1_eDBD_Methyl-HT-SELEX 		0.784 0.870
sens-2
M06165_2.00 		Drosophila melanogaster
RYAAATCWSDGCAYNC
GNRTGCHSWGATTTRY		 B1H
Zhu et al.(2011)
sens-2_SANGER_2.5_FBgn0051632 		0.777 0.833
Gfi1b
M08098_2.00 		Mus musculus
MAATCWCWGCH
DGCWGWGATTK		 ChIP-seq
Mathelier et al.(2014)
MA0483.1 		0.774 0.833
Gfi1b
M08977_2.00 		Mus musculus
MAAYCACWGH
DCWGWGRTTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_MOUSE.H11MO.0.A 		0.774 0.833
Gfi1b
M09514_2.00 		Mus musculus
MAATCWSWGC
GCWSWGATTK		 Misc
Heinz et al.(2010)
HPC7-Gfi1b_GSE22178 		0.774 0.833
GFI1B
M00240_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_REF 		0.772 0.826
GFI1B
M04523_2.00 		Homo sapiens
NMAATCASDGCNNBBCACTNN
NNAGTGVVNNGCHSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_HT-SELEX 		0.772 0.826
GFI1B
M08909_2.00 		Homo sapiens
MAATCWSDGY
RCHSWGATTK		 Misc
Kulakovskiy et al.(2013)
GFI1B_HUMAN.H11MO.0.A 		0.772 0.826
GFI1B
M10243_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_01 		0.772 0.826
GFI1B
M10244_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$GFI1B_Q6 		0.772 0.826
GFI1B
M04524_2.00 		Homo sapiens
NMAATCASWGCDNNBCACTHN
NDAGTGVNNHGCWSTGATTKN		 SELEX
Yin et al.(2017)
GFI1B_eDBD_Methyl-HT-SELEX 		0.772 0.826
GFI1B
M00239_2.00 		Homo sapiens
NNAAATCWSDN
NHSWGATTTNN		 PBM
Barrera et al.(2016)
GFI1B_A204T 		0.762 0.819
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw.11.853.1 C2H2 ZF 2 25
e_gw.11.853.1 C2H2 ZF 31 53
e_gw.11.853.1 C2H2 ZF 59 81
e_gw.11.853.1 C2H2 ZF 87 109
e_gw.11.853.1 C2H2 ZF 115 137
e_gw.11.853.1 C2H2 ZF 143 166

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R000889 Calypte anna Aan_R000889 I 0.784
Aan_R008865 Calypte anna Aan_R008865 I 0.779
Afo_R001655 Aptenodytes forsteri Afo_R001655 I 0.779
Afo_R006147 Aptenodytes forsteri Afo_R006147 I 0.784
Alligator_sinensis_CCG007476.1 Alligator sinensis Alligator_sinensis_CCG007476.1 I 0.784
Brh_R002465 Buceros rhinoceros Brh_R002465 I 0.784
CapteG45287 Capitella teleta CapteG45287 I 0.771
CGI_10011355 Crassostrea gigas CGI_10011355 I 0.793
CGI_10017941 Crassostrea gigas CGI_10017941 I 0.768
Cmyd_10004881 Chelonia mydas Cmyd_10004881 I 0.782
Cmyd_10017172 Chelonia mydas Cmyd_10017172 I 0.781
ENSAMEG00000013858 Ailuropoda melanoleuca ENSAMEG00000013858 I 0.784
ENSAMXG00000004835 Astyanax mexicanus ENSAMXG00000004835 I 0.788
ENSAPLG00000003373 Anas platyrhynchos ENSAPLG00000003373 I 0.779
ENSAPLG00000015700 Anas platyrhynchos ENSAPLG00000015700 I 0.784
ENSBTAP00000016974-D1 Bos grunniens ENSBTAP00000016974-D1 I 0.762
ENSBTAP00000022231-D1 Bos grunniens ENSBTAP00000022231-D1 I 0.780
ENSCSAG00000015008 Chlorocebus sabaeus ENSCSAG00000015008 I 0.774
ENSFALG00000001479 Ficedula albicollis ENSFALG00000001479 I 0.779
ENSGALG00000005940 Gallus gallus ENSGALG00000005940 I 0.784
ENSGMOG00000007737 Gadus morhua ENSGMOG00000007737 I 0.784
ENSGMOG00000017295 Gadus morhua ENSGMOG00000017295 I 0.782
ENSGMOG00000019123 Gadus morhua ENSGMOG00000019123 I 0.766
ENSLACG00000012207 Latimeria chalumnae ENSLACG00000012207 I 0.772
ENSLACG00000013362 Latimeria chalumnae ENSLACG00000013362 I 0.784
ENSLOCG00000004711 Lepisosteus oculatus ENSLOCG00000004711 I 0.783
ENSLOCG00000005750 Lepisosteus oculatus ENSLOCG00000005750 I 0.764
ENSMMUG00000005068 Macaca mulatta ENSMMUG00000005068 I 0.784
ENSMPUG00000004178 Mustela putorius furo ENSMPUG00000004178 I 0.784
ENSMPUG00000012489 Mustela putorius furo ENSMPUG00000012489 I 0.772
ENSNLEG00000010470 Nomascus leucogenys ENSNLEG00000010470 I 0.784
ENSNLEG00000012963 Nomascus leucogenys ENSNLEG00000012963 I 0.772
ENSONIG00000010573 Oreochromis niloticus ENSONIG00000010573 I 0.780
ENSONIG00000013011 Oreochromis niloticus ENSONIG00000013011 I 0.755
ENSONIG00000019246 Oreochromis niloticus ENSONIG00000019246 I 0.785
ENSP00000361195 Macaca fascicularis ENSP00000361195 I 0.774
ENSP00000399719 Macaca fascicularis ENSP00000399719 I 0.780
ENSPANG00000016433 Papio anubis ENSPANG00000016433 I 0.784
ENSPANG00000024216 Papio anubis ENSPANG00000024216 I 0.774
ENSPFOG00000003460 Poecilia formosa ENSPFOG00000003460 I 0.755
ENSPFOG00000017327 Poecilia formosa ENSPFOG00000017327 I 0.780
ENSPFOG00000023214 Poecilia formosa ENSPFOG00000023214 I 0.784
ENSPPYG00000019718 Pongo abelii ENSPPYG00000019718 I 0.772
ENSPSIG00000008734 Pelodiscus sinensis ENSPSIG00000008734 I 0.784
ENSPSIG00000012112 Pelodiscus sinensis ENSPSIG00000012112 I 0.777
ENSSTOG00000014583 Ictidomys tridecemlineatus ENSSTOG00000014583 I 0.784
ENSSTOG00000022285 Ictidomys tridecemlineatus ENSSTOG00000022285 I 0.777
ENSXMAG00000009274 Xiphophorus maculatus ENSXMAG00000009274 I 0.780
GA16348 Drosophila pseudoobscura FBgn0076363 I 0.777
GE14143 Drosophila yakuba FBgn0231766 I 0.777
GF15430 Drosophila ananassae FBgn0092455 I 0.777
GFI1 Anolis carolinensis ENSACAG00000004498 I 0.785
GFI1 Bos taurus ENSBTAG00000016723 I 0.784
GFI1 Canis familiaris ENSCAFG00000020155 I 0.784
GFI1 Callithrix jacchus ENSCJAG00000017609 I 0.784
GFI1 Cavia porcellus ENSCPOG00000011727 I 0.780
GFI1 Dasypus novemcinctus ENSDNOG00000000782 I 0.784
GFI1 Equus caballus ENSECAG00000006647 I 0.784
GFI1 Erinaceus europaeus ENSEEUG00000000198 I 0.784
GFI1 Felis catus ENSFCAG00000005914 I 0.784
GFI1 Homo sapiens ENSG00000162676 D 0.784
GFI1 Gorilla gorilla ENSGGOG00000005320 I 0.784
GFI1 Loxodonta africana ENSLAFG00000018346 I 0.784
GFI1 Meleagris gallopavo ENSMGAG00000008187 I 0.784
GFI1 Myotis lucifugus ENSMLUG00000015191 I 0.784
GFI1 Monodelphis domestica ENSMODG00000011802 I 0.784
Gfi1 Mus musculus ENSMUSG00000029275 D 0.784
GFI1 Otolemur garnettii ENSOGAG00000027913 I 0.784
GFI1 Ochotona princeps ENSOPRG00000001473 I 0.784
GFI1 Pteropus vampyrus ENSPVAG00000006928 I 0.784
Gfi1 Rattus norvegicus ENSRNOG00000002042 D 0.784
GFI1 Sus scrofa ENSSSCG00000006902 I 0.784
GFI1 Taeniopygia guttata ENSTGUG00000006060 I 0.784
GFI1 Tursiops truncatus ENSTTRG00000000082 I 0.784
gfi1 Xenopus tropicalis XB-GENE-960553 I 0.784
gfi1aa Danio rerio ENSDARG00000020746 I 0.784
gfi1aa Gasterosteus aculeatus ENSGACG00000015674 I 0.774
gfi1aa Oryzias latipes ENSORLG00000005060 I 0.780
gfi1aa Takifugu rubripes ENSTRUG00000004744 I 0.784
gfi1ab Danio rerio ENSDARG00000044457 I 0.782
gfi1ab Gasterosteus aculeatus ENSGACG00000004257 I 0.774
gfi1ab Tetraodon nigroviridis ENSTNIG00000000651 I 0.794
gfi1ab Takifugu rubripes ENSTRUG00000000415 I 0.793
GFI1B Bos taurus ENSBTAG00000012772 I 0.762
GFI1B Canis familiaris ENSCAFG00000019877 I 0.772
GFI1B Callithrix jacchus ENSCJAG00000018071 I 0.772
GFI1B Cavia porcellus ENSCPOG00000026928 I 0.774
gfi1b Danio rerio ENSDARG00000079947 I 0.764
GFI1B Dasypus novemcinctus ENSDNOG00000036528 I 0.772
Gfi1b Dipodomys ordii ENSDORG00000000342 I 0.782
GFI1B Equus caballus ENSECAG00000008127 I 0.772
GFI1B Felis catus ENSFCAG00000027147 I 0.770
GFI1B Homo sapiens ENSG00000165702 D 0.772
gfi1b Gasterosteus aculeatus ENSGACG00000018134 I 0.765
GFI1B Gallus gallus ENSGALG00000003478 I 0.779
GFI1B Gorilla gorilla ENSGGOG00000015828 I 0.772
GFI1B Loxodonta africana ENSLAFG00000022367 I 0.769
GFI1B Meleagris gallopavo ENSMGAG00000006129 I 0.779
GFI1B Myotis lucifugus ENSMLUG00000006673 I 0.761
GFI1B Macaca mulatta ENSMMUG00000005948 I 0.764
GFI1B Monodelphis domestica ENSMODG00000012600 I 0.774
Gfi1b Mus musculus ENSMUSG00000026815 D 0.774
GFI1B Ornithorhynchus anatinus ENSOANG00000014723 I 0.764
GFI1B Oryctolagus cuniculus ENSOCUG00000001793 I 0.772
GFI1B Otolemur garnettii ENSOGAG00000008879 I 0.778
GFI1B Procavia capensis ENSPCAG00000012329 I 0.770
GFI1B Pan troglodytes ENSPTRG00000021505 I 0.772
Gfi1b Rattus norvegicus ENSRNOG00000011353 I 0.772
GFI1B Sus scrofa ENSSSCG00000005737 I 0.770
gfi1b Tetraodon nigroviridis ENSTNIG00000003834 I 0.757
gfi1b Takifugu rubripes ENSTRUG00000004525 I 0.757
gfi1b Xenopus tropicalis XB-GENE-944426 I 0.757
gfi1b.L Xenopus laevis XB-GENE-944429 I 0.757
Gfo_R007994 Geospiza fortis Gfo_R007994 I 0.779
Gfo_R010648 Geospiza fortis Gfo_R010648 I 0.784
GG10437 Drosophila erecta FBgn0102746 I 0.777
GH13715 Drosophila grimshawi FBgn0121191 I 0.777
GI23984 Drosophila mojavensis FBgn0146708 I 0.777
GJ21268 Drosophila virilis FBgn0208401 I 0.777
GK24242 Drosophila willistoni FBgn0226203 I 0.777
GL26188 Drosophila persimilis FBgn0163770 I 0.777
GM16223 Drosophila sechellia FBgn0171139 I 0.777
LotgiG129344 Lottia gigantea LotgiG129344 I 0.788
LotgiG83709 Lottia gigantea LotgiG83709 I 0.768
MDOA011065 Musca domestica MDOA011065 I 0.777
Ocbimv22002861m.g Octopus bimaculoides Ocbimv22002861m.g N 0.757
Ogr09401 Ophisaurus gracilis Ogr09401 I 0.785
Pvit_00259 Pogona vitticeps Pvit_00259 I 0.782
Sakowv30015302m.g Saccoglossus kowalevskii Sakowv30015302m.g I 0.768
Sakowv30015313m.g Saccoglossus kowalevskii Sakowv30015313m.g I 0.785
sens-2 Drosophila melanogaster FBgn0051632 D 0.777
SPU_012645 Strongylocentrotus purpuratus SPU_012645 I 0.779
Tal_R001363 Tyto alba Tal_R001363 I 0.779
Tal_R006464 Tyto alba Tal_R006464 I 0.784
tetur16g01570 Tetranychus urticae tetur16g01570 I 0.790