Ocbimv22038914m.g (Octopus bimaculoides)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Ocbimv22038914m.g T142113_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF76
M04398_2.00 		Homo sapiens
NNHWCCCABAATGCAHYRCRN
NYGYRDTGCATTVTGGGWDNN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_HT-SELEX 		0.775 0.839
ZNF76
M08278_2.00 		Homo sapiens
BCSCRNDGSMTBCTGGGARNT
ANYTCCCAGVAKSCHNYGSGV		 ChIP-seq
Schmitges et al.(2016)
P36508_1-7.RCADE 		0.775 0.839
ZNF76
M08856_2.00 		Homo sapiens
ACTMCMHYTCCCAGVRKSCHHY
RDDGSMYBCTGGGARDKGKAGT		 Misc
Kulakovskiy et al.(2013)
ZNF76_HUMAN.H11MO.0.C 		0.775 0.839
ZNF76
M04399_2.00 		Homo sapiens
NYTWCCCAYAATGCAHYRCDN
NHGYRDTGCATTRTGGGWARN		 SELEX
Yin et al.(2017)
ZNF76_eDBD_Methyl-HT-SELEX 		0.775 0.839
Zfp143
M09010_2.00 		Mus musculus
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_MOUSE.H11MO.0.A 		0.772 0.851
ZNF143
M02899_2.00 		Homo sapiens
YWCCCAYAATGCAYYG
CRRTGCATTRTGGGWR		 SELEX
Jolma et al.(2013)
ZNF143_1 		0.772 0.845
ZNF143
M07931_2.00 		Homo sapiens
RACTACAWYTCCCAG
CTGGGARWTGTAGTY		 ChIP-seq
Gerstein et al.(2012)
GM12878_ZNF143_Stanford 		0.772 0.845
ZNF143
M08910_2.00 		Homo sapiens
RRACTACAWYTCCCAGVRKSCH
DGSMYBCTGGGARWTGTAGTYY		 Misc
Kulakovskiy et al.(2013)
ZN143_HUMAN.H11MO.0.A 		0.772 0.845
ZNF143
M09510_2.00 		Homo sapiens
NNYTCCCAKVAKSCH
DGSMTBMTGGGARNN		 Misc
Heinz et al.(2010)
CUTLL-ZNF143_GSE29600 		0.772 0.845
ZNF143
M10247_2.00 		Homo sapiens
NYYWCCCABMATGCAHYRCRNB
VNYGYRDTGCATKVTGGGWRRN		 Transfac
Matys et al.(2006)
V$STAF_01 		0.772 0.845
ZNF143
M10248_2.00 		Homo sapiens
MHBWCCCAKVRTBCMWHGMRV
BYKCDWKGVAYBMTGGGWVDK		 Transfac
Matys et al.(2006)
V$STAF_02 		0.772 0.845
ZNF143
M10249_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$STAF_Q4_01 		0.772 0.845
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22038914m.p C2H2 ZF 125 149
Ocbimv22038914m.p C2H2 ZF 155 179
Ocbimv22038914m.p C2H2 ZF 185 209
Ocbimv22038914m.p C2H2 ZF 215 239
Ocbimv22038914m.p C2H2 ZF 245 269
Ocbimv22038914m.p C2H2 ZF 275 299
Ocbimv22038914m.p C2H2 ZF 305 328
Ocbimv22038915m.p C2H2 ZF 106 130
Ocbimv22038915m.p C2H2 ZF 136 160
Ocbimv22038915m.p C2H2 ZF 166 190
Ocbimv22038915m.p C2H2 ZF 196 220
Ocbimv22038915m.p C2H2 ZF 226 250
Ocbimv22038915m.p C2H2 ZF 256 280
Ocbimv22038915m.p C2H2 ZF 286 309

Links

Other C2H2 ZF family TFs
Other Octopus bimaculoides TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O5_04090 Cladophialophora psammophila A1O5_04090 N
G647_00278 Cladophialophora carrionii G647_00278 N
PV04_01844 Capronia semiimmersa PV04_01844 N
PV05_08733 Exophiala xenobiotica PV05_08733 N
PV07_10612 Cladophialophora immunda PV07_10612 N
PV08_04625 Exophiala spinifera PV08_04625 N
Z517_08739 Fonsecaea pedrosoi Z517_08739 N
Z518_08035 Rhinocladiella mackenziei Z518_08035 N
Z519_03363 Cladophialophora bantiana Z519_03363 N