CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

MDP0000161241 *(Malus domestica)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	MDP0000161241	T143179_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
AT1G14580 M06797_2.00	Arabidopsis thaliana	NNNWWTTTTGTCKTTTWSYD	HRSWAAAMGACAAAAWWNNN	Dap-seq OMalley et al.(2016) At1g14580_col_a	0.827	0.929
AT1G14580 M06798_2.00	Arabidopsis thaliana	NNTTTTGTCKTTTWSYD	HRSWAAAMGACAAAANN	Dap-seq OMalley et al.(2016) At1g14580_colamp_a	0.827	0.929
IDD5 M06807_2.00	Arabidopsis thaliana	DNTTTTGTCKTTTTSYD	HRSAAAAMGACAAAANH	Dap-seq OMalley et al.(2016) IDD5_colamp_a	0.827	0.929
IDD5 M06808_2.00	Arabidopsis thaliana	WTTTTGTCKTTTWSYD	HRSWAAAMGACAAAAW	Dap-seq OMalley et al.(2016) IDD5_col	0.827	0.929
IDD7 M06803_2.00	Arabidopsis thaliana	NDDTTTTGTCKTTTWBYD	HRVWAAAMGACAAAAHHN	Dap-seq OMalley et al.(2016) IDD7_col_a	0.822	0.929
IDD4 M06809_2.00	Arabidopsis thaliana	WWTTTTGTCKTTTWSYD	HRSWAAAMGACAAAAWW	Dap-seq OMalley et al.(2016) IDD4_col_a	0.822	0.905
MGP M06795_2.00	Arabidopsis thaliana	HNHDWTTTTGTCKTTTWNYD	HRNWAAAMGACAAAAWHDND	Dap-seq OMalley et al.(2016) MGP_col_a	0.822	0.905
MGP M06796_2.00	Arabidopsis thaliana	NNDTTTTGTCKTTTWBYD	HRVWAAAMGACAAAAHNN	Dap-seq OMalley et al.(2016) MGP_colamp_a	0.822	0.905
NUC M06822_2.00	Arabidopsis thaliana	NNNNNTTTTGTCKTYTWBYD	HRVWARAMGACAAAANNNNN	Dap-seq OMalley et al.(2016) NUC_col_a	0.798	0.881
NUC M06823_2.00	Arabidopsis thaliana	NDTTTTGTCGTYTWNYD	HRNWARACGACAAAAHN	Dap-seq OMalley et al.(2016) NUC_colamp_a	0.798	0.881
JKD M06818_2.00	Arabidopsis thaliana	HHNWWTTTTGTCKTTTWBYD	HRVWAAAMGACAAAAWWNDD	Dap-seq OMalley et al.(2016) JKD_col_a	0.792	0.905
IDD1 M06824_2.00	Arabidopsis thaliana	DNTTTTGTCKTTTWBYD	HRVWAAAMGACAAAANH	Dap-seq OMalley et al.(2016) At5g66730_colamp_a	0.788	0.881
IDD1 M06825_2.00	Arabidopsis thaliana	WDTTTTGTCKTTTWNYD	HRNWAAAMGACAAAAHW	Dap-seq OMalley et al.(2016) At5g66730_col	0.788	0.881
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
MDP0000161241	C2H2 ZF	145	166	WKCDKCSKKYAVQSDWKAHQKT
MDP0000161241	C2H2 ZF	166	191	TCGTREYKCDCGTIFSRRDSFITHRA

Links
Other C2H2 ZF family TFs
Other *Malus domestica* TFs

667 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
A1O9_05414	Exophiala aquamarina	A1O9_05414	N
COCCADRAFT_87621	Bipolaris zeicola	COCCADRAFT_87621	N
L804_04538	Cryptococcus gattii	L804_04538	N
MPER_03261	Moniliophthora perniciosa	MPER_03261	N
PDIP_05790	Penicillium digitatum	PDIP_05790	N
PISMIDRAFT_655539	Pisolithus microcarpus	PISMIDRAFT_655539	N
UV8b_3852	Ustilaginoidea virens	UV8b_3852	N
VDAG_07325	Verticillium dahliae	VDAG_07325	N

MDP0000161241 (Malus domestica) C2H2 ZF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

667 Related TFs

MDP0000161241 **(Malus domestica)
C2H2 ZF**