Pavir.Ab02618 (Panicum virgatum)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Pavir.Ab02618 T143306_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZAT4
M01168_2.00 		Arabidopsis thaliana
NNHRSTN
NASYDNN		 PBM
Lambert et al.(2019)
pTH11142 		0.786 0.818
ZAT9
M06817_2.00 		Arabidopsis thaliana
YTACTWHH
DDWAGTAR		 Dap-seq
OMalley et al.(2016)
At3g60580_col_a 		0.786 0.818
ZAT1
M01167_2.00 		Arabidopsis thaliana
NHRCTNN
NNAGYDN		 PBM
Lambert et al.(2019)
pTH10246 		0.785 0.795
AZF2
M01854_2.00 		Arabidopsis thaliana
NASTRNN
NNYASTN		 PBM
Weirauch et al.(2014)
pTH8258 		0.769 0.659
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab02618.1.p C2H2 ZF 187 208
Pavir.Ab02618.1.p C2H2 ZF 248 269

Links

Other C2H2 ZF family TFs
Other Panicum virgatum TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_08721 Capronia coronata A1O1_08721 N
A1O3_08106 Capronia epimyces A1O3_08106 N
A1O5_04458 Cladophialophora psammophila A1O5_04458 N
A1O5_11083 Cladophialophora psammophila A1O5_11083 N
A1O7_03367 Cladophialophora yegresii A1O7_03367 N
A1O9_03441 Exophiala aquamarina A1O9_03441 N
A1O9_12648 Exophiala aquamarina A1O9_12648 N
AFUA_5G06410 Aspergillus fumigatus CADAFUAG00006238 N
ANIA_02270 Aspergillus nidulans CADANIAG00008962 N
ATEG_09390 Aspergillus terreus CADATEAG00008360 N
BDDG_09052 Blastomyces dermatitidis BDDG_09052 N
CADANGAG00013526 Aspergillus niger CADANGAG00013526 N
CIMG_06012 Coccidioides immitis CIMG_06012 N
CPC735_025940 Coccidioides posadasii CPC735_025940 N
EPUS_04193 Endocarpon pusillum EPUS_04193 N
estExt_Genewise1Plus.C_150467 Cochliobolus heterostrophus C5 estExt_Genewise1Plus.C_150467 N
EURHEDRAFT_414224 Aspergillus ruber EURHEDRAFT_414224 N
fgenesh1_pm.00162_#_137 Aspergillus carbonarius fgenesh1_pm.00162_#_137 N
G647_03415 Cladophialophora carrionii G647_03415 N
G647_05017 Cladophialophora carrionii G647_05017 N
H101_07203 Trichophyton interdigitale H101_07203 N
H102_04274 Trichophyton rubrum H102_04274 N
H105_04299 Trichophyton soudanense H105_04299 N
HMPREF1120_04992 Exophiala dermatitidis HMPREF1120_04992 N
HMPREF1120_09222 Exophiala dermatitidis HMPREF1120_09222 N
HMPREF1541_04963 Cyphellophora europaea HMPREF1541_04963 N
HMPREF1541_06758 Cyphellophora europaea HMPREF1541_06758 N
MCYG_06896 Microsporum canis MCYG_06896 N
MCYG_06896 Arthroderma otae MCYG_06896 N
MGYG_03712 Microsporum gypseum MGYG_03712 N
NFIA_036720 Neosartorya fischeri CADNFIAG00003562 N
Pc21g17490 Penicillium chrysogenum Pc21g17490 N
PCH_Pc21g17490 Penicillium rubens PCH_Pc21g17490 N
PDE_09355 Penicillium oxalicum PDE_09355 N
PMAA_036960 Penicillium marneffei PMAA_036960 N
PMAA_036960 Talaromyces marneffei PMAA_036960 N
PV04_03557 Capronia semiimmersa PV04_03557 N
PV04_03941 Capronia semiimmersa PV04_03941 N
PV05_05879 Exophiala xenobiotica PV05_05879 N
PV05_07172 Exophiala xenobiotica PV05_07172 N
PV06_00153 Exophiala oligosperma PV06_00153 N
PV07_04661 Cladophialophora immunda PV07_04661 N
PV07_06727 Cladophialophora immunda PV07_06727 N
PV08_09743 Exophiala spinifera PV08_09743 N
PV10_05359 Exophiala mesophila PV10_05359 N
PV11_00858 Exophiala sideris PV11_00858 N
PV11_02684 Exophiala sideris PV11_02684 N
PVAR5_7243 Byssochlamys spectabilis PVAR5_7243 N
TSTA_055160 Talaromyces stipitatus TSTA_055160 N
Z517_05815 Fonsecaea pedrosoi Z517_05815 N
Z517_10400 Fonsecaea pedrosoi Z517_10400 N
Z518_01292 Rhinocladiella mackenziei Z518_01292 N
Z518_11251 Rhinocladiella mackenziei Z518_11251 N
Z519_02290 Cladophialophora bantiana Z519_02290 N
Z519_06883 Cladophialophora bantiana Z519_06883 N