13440_YKL062W (Saccharomyces mikatae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 13440_YKL062W T145918_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MSN4
M00032_2.00 		Saccharomyces cerevisiae
NYCCCYNN
NNRGGGRN		 PBM
Badis et al.(2008)
MSN4_2121 		0.827 1.000
MSN4
M07462_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0342.1 		0.827 1.000
MSN4
M08533_2.00 		Saccharomyces cerevisiae
CCCCT
AGGGG		 Misc
DeBoer et al.(2011)
YKL062W_518 		0.827 1.000
KLLA0_F26961g
M01039_2.00 		Kluyveromyces lactis
CYCCYTD
HARGGRG		 PBM
Siggers et al.(2014)
KLLA0F29691gKlac 		0.787 0.826
MSN2
M00036_2.00 		Saccharomyces cerevisiae
NVCCCCTK
MAGGGGBN		 PBM
Badis et al.(2008)
MSN2_2101 		0.781 0.761
MSN2
M07466_2.00 		Saccharomyces cerevisiae
CCCCY
RGGGG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0341.1 		0.781 0.761
MSN2
M08538_2.00 		Saccharomyces cerevisiae
NHYCCKN
NMGGRDN		 Misc
DeBoer et al.(2011)
YMR037C_1380 		0.781 0.761
MSN2
M10399_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MSN2_Q4 		0.781 0.761
CAGL0M13189g
M01034_2.00 		Candida glabrata
MYCCBBDNN
NNHVVGGRK		 PBM
Siggers et al.(2014)
CAGL0M13189gCgla 		0.774 0.891
CaO19.4752
M01035_2.00 		Candida albicans
VCCCCYDNNN
NNNHRGGGGB		 PBM
Siggers et al.(2014)
Msn4_orf19.4752Calb 		0.761 0.783
CAGL0F05995g
M01032_2.00 		Candida glabrata
NYCCYYNN
NNRRGGRN		 PBM
Siggers et al.(2014)
CAGL0F05995gCgla 		0.757 0.783
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
13440_YKL062W C2H2 ZF 584 607
13440_YKL062W C2H2 ZF 613 635

Links

Other C2H2 ZF family TFs
Other Saccharomyces mikatae TFs

46 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29685.m000503 Ricinus communis 29685.m000503 N
29889.m003255 Ricinus communis 29889.m003255 N
Aquca_008_00101 Aquilegia coerulea Aquca_008_00101 N
BGIOSGA012540 Oryza indica BGIOSGA012540 N
Bo5g010680 Brassica oleracea Bo5g010680 N
Bostr.13671s0465 Boechera stricta Bostr.13671s0465 N
BRADI5G11330 Brachypodium distachyon BRADI5G11330 N
Cagra.4395s0212 Capsella grandiflora Cagra.4395s0212 N
Carubv10012599m.g Capsella rubella Carubv10012599m.g N
cassava25471.m1 Manihot esculenta cassava25471.m1 N
cassava28226.m1 Manihot esculenta cassava28226.m1 N
Ciclev10000456m.g Citrus clementina Ciclev10000456m.g N
Ciclev10004395m.g Citrus clementina Ciclev10004395m.g N
Cucsa.019230 Cucumis sativus Cucsa.019230 N
Eucgr.G00085 Eucalyptus grandis Eucgr.G00085 N
Eucgr.K03522 Eucalyptus grandis Eucgr.K03522 N
evm.TU.supercontig_113.2 Carica papaya evm.TU.supercontig_113.2 N
evm.TU.supercontig_151.57 Carica papaya evm.TU.supercontig_151.57 N
FRS11 Arabidopsis thaliana AT1G10240 N
gene05172-v1.0-hybrid Fragaria vesca gene05172-v1.0-hybrid N
gene29088-v1.0-hybrid Fragaria vesca gene29088-v1.0-hybrid N
GLYMA09G04394 Glycine max GLYMA09G04394 N
GLYMA10G00380 Glycine max GLYMA10G00380 N
GLYMA15G15450 Glycine max GLYMA15G15450 N
Gorai.006G118900 Gossypium raimondii Gorai.006G118900 N
MDP0000233216 Malus domestica MDP0000233216 N
MDP0000234814 Malus domestica MDP0000234814 N
MDP0000786741 Malus domestica MDP0000786741 N
MLOC_15705 Hordeum vulgare MLOC_15705 N
OB04G20960 Oryza brachyantha OB04G20960 N
orange1.1g004420m.g Citrus sinensis orange1.1g004420m.g N
orange1.1g047253m.g Citrus sinensis orange1.1g047253m.g N
ORGLA04G0107700 Oryza glaberrima ORGLA04G0107700 N
OS04G0443000 Oryza sativa OS04G0443000 N
PDK_20s1635961g004 Phoenix dactylifera PDK_20s1635961g004 N
PDK_20s1722071g001 Phoenix dactylifera PDK_20s1722071g001 N
PDK_20s1756181g001 Phoenix dactylifera PDK_20s1756181g001 N
PK06148.1 Cannabis sativa PK06148.1 N
PK12746.1 Cannabis sativa PK12746.1 N
Pm003854 Prunus mume Pm003854 N
Pm008290 Prunus mume Pm008290 N
POPTR_0002s20030 Populus trichocarpa POPTR_0002s20030 N
POPTR_0004s23620 Populus trichocarpa POPTR_0004s23620 N
PRUPE_ppa002003mg Prunus persica PRUPE_ppa002003mg N
PRUPE_ppa002379mg Prunus persica PRUPE_ppa002379mg N
SapurV1A.0158s0480 Salix purpurea SapurV1A.0158s0480 N
SapurV1A.0225s0240 Salix purpurea SapurV1A.0225s0240 N
Sb06g017580 Sorghum bicolor Sb06g017580 N
Si012297m.g Setaria italica Si012297m.g N
Solyc01g103180.2 Solanum lycopersicum Solyc01g103180.2 N
Solyc09g075640.2 Solanum lycopersicum Solyc09g075640.2 N
TCM_041141 Theobroma cacao TCM_041141 N
Thhalv10006984m.g Eutrema salsugineum Thhalv10006984m.g N
Traes_2AL_9A4A7514E Triticum aestivum Traes_2AL_9A4A7514E N
TRIUR3_11057 Triticum urartu TRIUR3_11057 N
VIT_05s0077g01400 Vitis vinifera VIT_05s0077g01400 N
VIT_07s0005g01120 Vitis vinifera VIT_07s0005g01120 N
VIT_12s0035g01360 Vitis vinifera VIT_12s0035g01360 N