CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

SROB_0002127201 *(Schistosoma rodhaini)* C2H2 ZF
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00096 (zf-C2H2)	IPR007087	SROB_0002127201	T156974_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
YY1 M08237_2.00	Homo sapiens	VNVGCVGCCATBTTD	HAAVATGGCBGCBNB	ChIP-seq Najafabadi et al.(2015b) YY1	0.793	0.901
YY1 M02877_2.00	Homo sapiens	NVSRCCATNDH	DHNATGGYSBN	SELEX Jolma et al.(2013) YY1_1	0.793	0.891
YY1 M04406_2.00	Homo sapiens	NDCCATYTTKRRBNDWNHGTGCK	MGCACDNWHNVYYMAARATGGHN	SELEX Yin et al.(2017) YY1_FL_HT-SELEX_1	0.793	0.891
YY1 M04407_2.00	Homo sapiens	NKMCGCCATYTTGN	NCAARATGGCGKMN	SELEX Yin et al.(2017) YY1_FL_HT-SELEX_2	0.793	0.891
YY1 M05845_2.00	Homo sapiens	NNNVGCCATNWYD	HRWNATGGCBNNN	SMiLE-seq Isakova et al.(2017) YY1	0.793	0.891
YY1 M08288_2.00	Homo sapiens	GCCGCCATBKYB	VRMVATGGCGGC	ChIP-seq Schmitges et al.(2016) P25490_1-4.RCADE	0.793	0.891
YY1 M08085_2.00	Homo sapiens	KCVGCCATBTTK	MAAVATGGCBGM	ChIP-seq Mathelier et al.(2014) MA0095.2	0.793	0.891
YY1 M07855_2.00	Homo sapiens	VNVGCCGCCATBTTK	MAAVATGGCGGCBNB	ChIP-seq Gerstein et al.(2012) GM12878_YY1_HudsonAlpha	0.793	0.891
YY1 M07856_2.00	Homo sapiens	GCSGCCATBTT	AAVATGGCSGC	ChIP-seq Gerstein et al.(2012) GM12891_YY1_HudsonAlpha	0.793	0.891
YY1 M07857_2.00	Homo sapiens	BSNVGCSGCCATBTT	AAVATGGCSGCBNSV	ChIP-seq Gerstein et al.(2012) GM12892_YY1_HudsonAlpha	0.793	0.891
YY1 M07858_2.00	Homo sapiens	NNVGCSGCCATBTTK	MAAVATGGCSGCBNN	ChIP-seq Gerstein et al.(2012) H1-hESC_YY1_HudsonAlpha	0.793	0.891
YY1 M07859_2.00	Homo sapiens	SBSGCSGCCATBTTK	MAAVATGGCSGCSVS	ChIP-seq Gerstein et al.(2012) K562b_YY1_UCD	0.793	0.891
YY1 M07860_2.00	Homo sapiens	GCCGCCATBTTKNNN	NNNMAAVATGGCGGC	ChIP-seq Gerstein et al.(2012) K562_YY1_HudsonAlpha	0.793	0.891
YY1 M07861_2.00	Homo sapiens	VGCSGCCATBTTK	MAAVATGGCSGCB	ChIP-seq Gerstein et al.(2012) NT2-D1_YY1_UCD	0.793	0.891
YY1 M08865_2.00	Homo sapiens	GCCGCCATYTTK	MAARATGGCGGC	Misc Kulakovskiy et al.(2013) TYY1_HUMAN.H11MO.0.A	0.793	0.891
Yy1 M08971_2.00	Mus musculus	GCCGCCATBTTB	VAAVATGGCGGC	Misc Kulakovskiy et al.(2013) TYY1_MOUSE.H11MO.0.A	0.793	0.891
YY1 M10138_2.00	Homo sapiens	NVNNDCCATNTWNNVWN	NWBNNWANATGGHNNBN	Transfac Matys et al.(2006) V$YY1_01	0.793	0.891
YY1 M10139_2.00	Homo sapiens	NNNSBGCCATCTDSNHTSND	HNSADNSHAGATGGCVSNNN	Transfac Matys et al.(2006) V$YY1_02	0.793	0.891
YY1 M10140_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$YY1_03	0.793	0.891
YY1 M10141_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$YY1_07	0.793	0.891
YY1 M10142_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$YY1_08	0.793	0.891
YY1 M10143_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$YY1_Q4_01	0.793	0.891
YY1 M10144_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$YY1_Q6_02	0.793	0.891
YY1 M10145_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$YY1_Q6_03	0.793	0.891
YY1 M10146_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$YY1_Q6	0.793	0.891
YY1 M04408_2.00	Homo sapiens	NDCCATYTTKRRCDDWWHGTGCY	RGCACDWWHHGYYMAARATGGHN	SELEX Yin et al.(2017) YY1_FL_Methyl-HT-SELEX_1	0.793	0.891
YY1 M04409_2.00	Homo sapiens	RKCSGCCATYTTGD	HCAARATGGCSGMY	SELEX Yin et al.(2017) YY1_FL_Methyl-HT-SELEX_2	0.793	0.891
TYY2_RAT M10385_2.00	Rattus norvegicus	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$YY2	0.785	0.837
pho M06053_2.00	Drosophila melanogaster	KNVGCCATDAHNSY	RSNDTHATGGCBNM	B1H Zhu et al.(2011) pho_FlyReg_FBgn0002521	0.778	0.870
pho M06054_2.00	Drosophila melanogaster	KCCGCCATHWTK	MAWDATGGCGGM	B1H Zhu et al.(2011) pho_SANGER_10_FBgn0002521	0.778	0.870
pho M06055_2.00	Drosophila melanogaster	NKBCGCCATHWTKNN	NNMAWDATGGCGVMN	B1H Zhu et al.(2011) pho_SOLEXA_5_FBgn0002521	0.778	0.870
phol M06144_2.00	Drosophila melanogaster	CGCCATHTTK	MAADATGGCG	B1H Zhu et al.(2011) phol_SANGER_5_FBgn0035997	0.757	0.793
phol M06145_2.00	Drosophila melanogaster	NKNCGCCATNTTKNN	NNMAANATGGCGNMN	B1H Zhu et al.(2011) phol_SOLEXA_5_FBgn0035997	0.757	0.793
For this family, TFs with SR scores > 0.755* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
SROB_0002127201-mRNA-1	C2H2 ZF	118	142	VPCPHKGCGKLFRDNSAMRKHLHTH
SROB_0002127201-mRNA-1	C2H2 ZF	147	169	HVCAECGKAFVESSKLKRHQLVH
SROB_0002127201-mRNA-1	C2H2 ZF	175	199	FQCNFEGCGKRFSLDFNLRTHVRIH
SROB_0002127201-mRNA-1	C2H2 ZF	205	229	YICPFENCHKRFAQSTNLKSHIMTH

Links
Other C2H2 ZF family TFs
Other *Schistosoma rodhaini* TFs

160 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action

SROB_0002127201 (Schistosoma rodhaini) C2H2 ZF

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

160 Related TFs

SROB_0002127201 **(Schistosoma rodhaini)
C2H2 ZF**