si:ch1073-284b18.2 (Gasterosteus aculeatus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSGACG00000013893 T164575_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.862 0.862
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.862 0.862
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000018348 CSD 35 106

Links

Other CSD family TFs
Other Gasterosteus aculeatus TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27964.m000352 Ricinus communis 27964.m000352 I
27964.m000356 Ricinus communis 27964.m000356 I
Aquca_028_00148 Aquilegia coerulea Aquca_028_00148 N
Aquca_037_00261 Aquilegia coerulea Aquca_037_00261 I
ATNIG1 Arabidopsis lyrata Al_scaffold_0008_132 I
BHLH28 Arabidopsis thaliana AT5G46830 D
Bostr.28243s0053 Boechera stricta Bostr.28243s0053 I
Bostr.7365s0026 Boechera stricta Bostr.7365s0026 I
Cagra.4923s0009 Capsella grandiflora Cagra.4923s0009 I
Carubv10001082m.g Capsella rubella Carubv10001082m.g I
cassava29800.valid.m1 Manihot esculenta cassava29800.valid.m1 I
cassava32651.m1 Manihot esculenta cassava32651.m1 I
Ca_17603 Cicer arietinum Ca_17603 I
Ciclev10019749m.g Citrus clementina Ciclev10019749m.g I
Eucgr.B00713 Eucalyptus grandis Eucgr.B00713 I
Eucgr.E00019 Eucalyptus grandis Eucgr.E00019 I
evm.TU.supercontig_141.19 Carica papaya evm.TU.supercontig_141.19 I
gene01894-v1.0-hybrid Fragaria vesca gene01894-v1.0-hybrid I
gene18651-v1.0-hybrid Fragaria vesca gene18651-v1.0-hybrid I
GLYMA07G05740 Glycine max GLYMA07G05740 I
GLYMA16G02320 Glycine max GLYMA16G02320 I
Gorai.001G151700 Gossypium raimondii Gorai.001G151700 I
Gorai.004G149500 Gossypium raimondii Gorai.004G149500 I
Gorai.007G111800 Gossypium raimondii Gorai.007G111800 I
Gorai.008G128800 Gossypium raimondii Gorai.008G128800 I
GSMUA_Achr1G18910_001 Musa acuminata GSMUA_Achr1G18910_001 I
MDP0000135282 Malus domestica MDP0000135282 N
MDP0000137325 Malus domestica MDP0000137325 I
MDP0000140864 Malus domestica MDP0000140864 N
MDP0000183948 Malus domestica MDP0000183948 I
MDP0000224302 Malus domestica MDP0000224302 I
MDP0000242554 Malus domestica MDP0000242554 I
MDP0000442310 Malus domestica MDP0000442310 I
MDP0000729514 Malus domestica MDP0000729514 I
MDP0000788304 Malus domestica MDP0000788304 N
MDP0000859492 Malus domestica MDP0000859492 I
MDP0000900024 Malus domestica MDP0000900024 I
MDP0000907218 Malus domestica MDP0000907218 N
mgf001993m Mimulus guttatus mgf001993m I
MTR_8g024770 Medicago truncatula MTR_8g024770 I
MTR_8g024790 Medicago truncatula MTR_8g024790 I
orange1.1g046178m.g Citrus sinensis orange1.1g046178m.g I
PGSC0003DMG400012237 Solanum tuberosum PGSC0003DMG400012237 I
PGSC0003DMG400018332 Solanum tuberosum PGSC0003DMG400018332 I
Pm023735 Prunus mume Pm023735 I
Pm023738 Prunus mume Pm023738 I
Pm028604 Prunus mume Pm028604 I
Pm028605 Prunus mume Pm028605 I
Pm028606 Prunus mume Pm028606 I
Pm028607 Prunus mume Pm028607 I
Pm029399 Prunus mume Pm029399 I
POPTR_0002s17750 Populus trichocarpa POPTR_0002s17750 I
PRUPE_ppa004680mg Prunus persica PRUPE_ppa004680mg I
PRUPE_ppa005343mg Prunus persica PRUPE_ppa005343mg I
PRUPE_ppa015634mg Prunus persica PRUPE_ppa015634mg I
PRUPE_ppa016220mg Prunus persica PRUPE_ppa016220mg I
PRUPE_ppa022165mg Prunus persica PRUPE_ppa022165mg I
PRUPE_ppa022201mg Prunus persica PRUPE_ppa022201mg I
PRUPE_ppa025417mg Prunus persica PRUPE_ppa025417mg I
PRUPE_ppa027182mg Prunus persica PRUPE_ppa027182mg I
SapurV1A.0003s0670 Salix purpurea SapurV1A.0003s0670 I
Solyc01g096370.2 Solanum lycopersicum Solyc01g096370.2 I
Solyc08g083170.1 Solanum lycopersicum Solyc08g083170.1 I
TCM_005064 Theobroma cacao TCM_005064 I
VIT_02s0025g02610 Vitis vinifera VIT_02s0025g02610 I
VIT_15s0048g02820 Vitis vinifera VIT_15s0048g02820 I