lin28b.S (Xenopus laevis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 XB-GENE-1218973 T165581_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.894 0.894
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.894 0.894
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH42225 CSD 33 105

Links

Other CSD family TFs
Other Xenopus laevis TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA001121 Oryza indica BGIOSGA001121 N
BRADI2G45117 Brachypodium distachyon BRADI2G45117 N
GRMZM2G001426 Zea mays GRMZM2G001426 N
GRMZM5G826526 Zea mays GRMZM5G826526 N
OMERI01G24610 Oryza meridionalis OMERI01G24610 N
ORGLA01G0197900 Oryza glaberrima ORGLA01G0197900 N
ORUFI01G27440 Oryza rufipogon ORUFI01G27440 N
OS01G0646300 Oryza sativa OS01G0646300 N
Pavir.J09720 Panicum virgatum Pavir.J09720 N
Sb03g029470 Sorghum bicolor Sb03g029470 N
Si001293m.g Setaria italica Si001293m.g N