CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

OLONG_012250 *(Oryza longistaminata)* Dof
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF02701 (zf-Dof)	IPR003851	OLONG_012250	T170784_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DOF1.5 M01938_2.00	Arabidopsis thaliana	ACKTTWWH	DWWAAMGT	PBM Weirauch et al.(2014) pTH7676	0.733	0.733
PK16340.1 M01220_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH10129	0.733	0.733
DOF1.5 M06829_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNHHHBHHNN	NNDDVDDDNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) COG1_col_a	0.733	0.733
DOF1.5 M06830_2.00	Arabidopsis thaliana	NHWWTDYACTTTTTN	NAAAAAGTRHAWWDN	Dap-seq OMalley et al.(2016) COG1_colamp_a	0.733	0.733
gw1.385.26.1 M01956_2.00	Physcomitrella patens	NNNCKTTWNN	NNWAAMGNNN	PBM Weirauch et al.(2014) pTH8458	0.700	0.700
CDF3 M01944_2.00	Arabidopsis thaliana	NHVCTTTWN	NWAAAGBDN	PBM Weirauch et al.(2014) pTH7659	0.667	0.667
CDF2 M01946_2.00	Arabidopsis thaliana	NHVCTTTWHN	NDWAAAGBDN	PBM Weirauch et al.(2014) pTH7574	0.667	0.667
e_gw1.149.93.1 M01951_2.00	Physcomitrella patens	NCDTTNNN	NNNAAHGN	PBM Weirauch et al.(2014) pTH8463	0.667	0.667
e_gw1.392.16.1 M01953_2.00	Physcomitrella patens	NNCTTTWNN	NNWAAAGNN	PBM Weirauch et al.(2014) pTH8686	0.667	0.667
estExt_fgenesh1_pg.C_370003 M01954_2.00	Physcomitrella patens	NNNNHDNNNN	NNNNHDNNNN	PBM Weirauch et al.(2014) pTH8469	0.667	0.667
PK23009.1 M01223_2.00	Cannabis sativa	NNHVCTTTWN	NWAAAGBDNN	PBM Lambert et al.(2019) pTH10279	0.667	0.667
CDF5 M06837_2.00	Arabidopsis thaliana	HHWKYDCTTTTHHYTTTHYHYYWHNHH	DDNDWRRDRDAAARDDAAAAGHRMWDD	Dap-seq OMalley et al.(2016) AT1G69570_col_a	0.667	0.667
CDF5 M06838_2.00	Arabidopsis thaliana	YVCTTTTNNYTTWHHHBHBNN	NNVDVDDDWAARNNAAAAGBR	Dap-seq OMalley et al.(2016) AT1G69570_colamp_a	0.667	0.667
CDF3 M06849_2.00	Arabidopsis thaliana	HWTDYMCTTTTTNNHHHHW	WDDDDNNAAAAAGKRHAWD	Dap-seq OMalley et al.(2016) CDF3_col_a	0.667	0.667
CDF3 M06850_2.00	Arabidopsis thaliana	DDYRCTTTTHNNHYTTTN	NAAARDNNDAAAAGYRHH	Dap-seq OMalley et al.(2016) CDF3_colamp_a	0.667	0.667
DOF2.4 M01940_2.00	Arabidopsis thaliana	NCKTTWN	NWAAMGN	PBM Weirauch et al.(2014) pTH7912	0.633	0.633
DOF3.1 M01942_2.00	Arabidopsis thaliana	NCKTTNNN	NNNAAMGN	PBM Weirauch et al.(2014) pTH8190	0.633	0.633
e_gw1.170.52.1 M01952_2.00	Physcomitrella patens	NNNCTTTHNN	NNDAAAGNNN	PBM Weirauch et al.(2014) pTH8464	0.633	0.633
gw1.12.257.1 M01955_2.00	Physcomitrella patens	NNDDNNN	NNNHHNN	PBM Weirauch et al.(2014) pTH8651	0.633	0.633
PK05671.1 M01215_2.00	Cannabis sativa	NCDWWNNN	NNNWWHGN	PBM Lambert et al.(2019) pTH10101	0.633	0.633
DOF2.4 M06841_2.00	Arabidopsis thaliana	HHWWTTHMCTTTTTN	NAAAAAGKDAAWWDD	Dap-seq OMalley et al.(2016) dof24_col_a	0.633	0.633
DOF2.4 M06842_2.00	Arabidopsis thaliana	HHMCTTTWTNNNNHN	NDNNNNAWAAAGKDD	Dap-seq OMalley et al.(2016) dof24_colamp_a	0.633	0.633
DOF1.8 M01939_2.00	Arabidopsis thaliana	NNNCKTTHNN	NNDAAMGNNN	PBM Weirauch et al.(2014) pTH7256	0.600	0.600
DOF1.8 M01062_2.00	Arabidopsis thaliana	NHVCTTTWH	DWAAAGBDN	PBM Sullivan et al.(2014) pTH7653	0.600	0.600
PK03929.1 M01214_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10165	0.600	0.600
PK07031.1 M01216_2.00	Cannabis sativa	NCKTTHN	NDAAMGN	PBM Lambert et al.(2019) pTH11435	0.600	0.600
PK10955.1 M01217_2.00	Cannabis sativa	VCTTTWNN	NNWAAAGB	PBM Lambert et al.(2019) pTH10264	0.600	0.600
DOF1.8 M06835_2.00	Arabidopsis thaliana	WWWYHMCTTTTTNNNHNHW	WDNDNNNAAAAAGKDRWWW	Dap-seq OMalley et al.(2016) At1g64620_100ng20cy_b	0.600	0.600
DOF1.8 M06836_2.00	Arabidopsis thaliana	NHHMCTTTTTN	NAAAAAGKDDN	Dap-seq OMalley et al.(2016) At1g64620_colamp_a	0.600	0.600
DOF2.2 M06839_2.00	Arabidopsis thaliana	HHHYHHHHYWTYHNCTTTTTN	NAAAAAGNDRAWRDDDDRDDD	Dap-seq OMalley et al.(2016) AT2G28810_col_a	0.600	0.600
DOF2.2 M06840_2.00	Arabidopsis thaliana	NYHNCTTTWTNNNHH	DDNNNAWAAAGNDRN	Dap-seq OMalley et al.(2016) AT2G28810_colamp_a	0.600	0.600
AT3G52440 M06852_2.00	Arabidopsis thaliana	DYHMCTTTWTN	NAWAAAGKDRH	Dap-seq OMalley et al.(2016) AT3G52440_col_a	0.600	0.600
AT3G52440 M06853_2.00	Arabidopsis thaliana	WWDDYHMCTTTTTNNHHYYWW	WWRRDDNNAAAAAGKDRHHWW	Dap-seq OMalley et al.(2016) AT3G52440_colamp_a	0.600	0.600
Dof3 M02676_2.00	Zea mays	BRCTTT	AAAGYV	SELEX Mathelier et al.(2014) MA0021.1	0.600	0.600
Dof3 M10439_2.00	Zea mays	NBNCTTTNNBN	NVNNAAAGNVN	Transfac Matys et al.(2006) P$DOF3_01	0.600	0.600
DOF2.5 M01212_2.00	Arabidopsis thaliana	NNNCKTTWNN	NNWAAMGNNN	PBM Lambert et al.(2019) pTH11562	0.567	0.567
DOF5.3 M01947_2.00	Arabidopsis thaliana	CKTTNNN	NNNAAMG	PBM Weirauch et al.(2014) pTH7182	0.567	0.567
DOF5.4 M01948_2.00	Arabidopsis thaliana	NDCGTTAWCN	NGWTAACGHN	PBM Weirauch et al.(2014) pTH7160	0.567	0.567
DOF5.4 M01949_2.00	Arabidopsis thaliana	NWACGTTWHNN	NNDWAACGTWN	PBM Weirauch et al.(2014) pTH7535	0.567	0.567
DOF5.6 M01063_2.00	Arabidopsis thaliana	NYDDWNNNN	NNNNWHHRN	PBM Sullivan et al.(2014) pTH7192	0.567	0.567
DOF5.6 M01950_2.00	Arabidopsis thaliana	NCKTTWNN	NNWAAMGN	PBM Weirauch et al.(2014) pTH7655	0.567	0.567
DOF5.7 M00862_2.00	Arabidopsis thaliana	NNNCKTTN	NAAMGNNN	PBM Franco-Zorrilla et al.(2014) Dof5.7	0.567	0.567
PK01144.1 M01213_2.00	Cannabis sativa	NCTTTWN	NWAAAGN	PBM Lambert et al.(2019) pTH10160	0.567	0.567
PK14080.1 M01218_2.00	Cannabis sativa	NCDTTHNN	NNDAAHGN	PBM Lambert et al.(2019) pTH10123	0.567	0.567
PK15337.1 M01219_2.00	Cannabis sativa	NCTTTHN	NDAAAGN	PBM Lambert et al.(2019) pTH10186	0.567	0.567
PK20317.1 M01221_2.00	Cannabis sativa	CKTTWNN	NNWAAMG	PBM Lambert et al.(2019) pTH11298	0.567	0.567
PK23763.1 M01224_2.00	Cannabis sativa	NNNCTTTWN	NWAAAGNNN	PBM Lambert et al.(2019) pTH10194	0.567	0.567
fgenesh1_pg.C_Chr_08.0001000114 M01957_2.00	Ostreococcus tauri	NCKWWNNN	NNNWWMGN	PBM Weirauch et al.(2014) pTH9431	0.567	0.567
DOF1.7 M06833_2.00	Arabidopsis thaliana	HNNHWTYWNCTTTTYNHNHHN	NDDNDNRAAAAGNWRAWDNND	Dap-seq OMalley et al.(2016) Adof1_col_a	0.567	0.567
DOF1.7 M06834_2.00	Arabidopsis thaliana	NNHNNYWRCTTTTTNNHHNNH	DNNDDNNAAAAAGYWRNNDNN	Dap-seq OMalley et al.(2016) Adof1_colamp_a	0.567	0.567
DOF5.1 M06863_2.00	Arabidopsis thaliana	HYHYWYHHHYTTWNCTTTTTN	NAAAAAGNWAARDDDRWRDRD	Dap-seq OMalley et al.(2016) AT5G02460_col_a	0.567	0.567
DOF5.1 M06864_2.00	Arabidopsis thaliana	NHDYHRCTTTWTNNHNNHN	NDNNDNNAWAAAGYDRHDN	Dap-seq OMalley et al.(2016) AT5G02460_colamp_a	0.567	0.567
DOF5.6 M06867_2.00	Arabidopsis thaliana	HHTYHNCTTTTTNHHHHHHHH	DDDDDDDDNAAAAAGNDRADD	Dap-seq OMalley et al.(2016) At5g62940_col_a	0.567	0.567
DOF2.5 M06843_2.00	Arabidopsis thaliana	DYHMCTTTTTN	NAAAAAGKDRH	Dap-seq OMalley et al.(2016) DAG2_col_a	0.567	0.567
DOF2.5 M06844_2.00	Arabidopsis thaliana	HWDYHMCTTTTTN	NAAAAAGKDRHWD	Dap-seq OMalley et al.(2016) DAG2_colamp_a	0.567	0.567
OBP3 M06854_2.00	Arabidopsis thaliana	BTHWCTTTTYNHYTTYWYYHH	DDRRWRAARDNRAAAAGWDAV	Dap-seq OMalley et al.(2016) OBP3_col_a	0.567	0.567
OBP3 M06855_2.00	Arabidopsis thaliana	NHNWHNHHNYWNCTTTTYN	NRAAAAGNWRNDDNDWNDN	Dap-seq OMalley et al.(2016) OBP3_colamp_a	0.567	0.567
DOF5.4 M06865_2.00	Arabidopsis thaliana	DNWNYHMCTTTTTN	NAAAAAGKDRNWNH	Dap-seq OMalley et al.(2016) OBP4_col_a	0.567	0.567
DOF5.4 M06866_2.00	Arabidopsis thaliana	HWDYHVCTTTTTNNNHHNH	DNDDNNNAAAAAGBDRHWD	Dap-seq OMalley et al.(2016) OBP4_colamp_a	0.567	0.567
Dof2 M02674_2.00	Zea mays	NGCTTT	AAAGCN	SELEX Mathelier et al.(2014) MA0020.1	0.567	0.567
PBF M02675_2.00	Zea mays	RCTTT	AAAGY	SELEX Mathelier et al.(2014) MA0064.1	0.567	0.567
MNB1A M02677_2.00	Zea mays	DCTTT	AAAGH	SELEX Mathelier et al.(2014) MA0053.1	0.567	0.567
MNB1A M10440_2.00	Zea mays	NNDCTTTWNNN	NNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF1_01	0.567	0.567
Dof2 M10436_2.00	Zea mays	NNDCTTTWNND	HNNWAAAGHNN	Transfac Matys et al.(2006) P$DOF2_01	0.567	0.567
Dof2 M10437_2.00	Zea mays	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DOF_Q2	0.567	0.567
PBF M10438_2.00	Zea mays	BBDCTTTWNWD	HWNWAAAGHVV	Transfac Matys et al.(2006) P$PBF_01	0.567	0.567
PK20555.1 M01222_2.00	Cannabis sativa	NNNCTTTWNN	NNWAAAGNNN	PBM Lambert et al.(2019) pTH10144	0.533	0.533
DOF4.3 M06857_2.00	Arabidopsis thaliana	AAAGNYRCTTT	AAAGYRNCTTT	Dap-seq OMalley et al.(2016) dof43_col_a	0.533	0.533
DOF4.3 M06858_2.00	Arabidopsis thaliana	NWAAAGHRVCTTTW	WAAAGBYDCTTTWN	Dap-seq OMalley et al.(2016) dof43_colamp_a	0.533	0.533
DOF3.4 M06851_2.00	Arabidopsis thaliana	NNNHYHYHHHWYYHNCTTTWB	VWAAAGNDRRWDDDRDRDNNN	Dap-seq OMalley et al.(2016) OBP1_col_a	0.533	0.533
Q6RK62_WHEAT M10441_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PBF_Q2_01	0.533	0.533
For this family, TFs with SR scores > 0.508* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
OLONG_012250-R1	Dof	33	64	VAREKACHRYWTAGGALRNVPVGAGRRKNRPL

Links
Other Dof family TFs
Other *Oryza longistaminata* TFs

895 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30006.m000282	Ricinus communis	30006.m000282	N	0.000
30170.m013669	Ricinus communis	30170.m013669	N	0.000
AMTR_s00159p00062070	Amborella trichopoda	AMTR_s00159p00062070	N	0.000
Aquca_009_00241	Aquilegia coerulea	Aquca_009_00241	N	0.000
AT2G41710	Arabidopsis thaliana	AT2G41710	N	0.000
BBM	Vitis vinifera	VIT_04s0023g00950	N	0.000
BGIOSGA019793	Oryza indica	BGIOSGA019793	N	0.000
BGIOSGA023402	Oryza indica	BGIOSGA023402	N	0.000
Bo3g035770	Brassica oleracea	Bo3g035770	N	0.000
Bo4g013420	Brassica oleracea	Bo4g013420	N	0.000
Bra004641	Brassica rapa	Bra004641	N	0.000
BRADI2G26987	Brachypodium distachyon	BRADI2G26987	N	0.000
Cagra.0914s0005	Capsella grandiflora	Cagra.0914s0005	N	0.000
Carubv10023272m.g	Capsella rubella	Carubv10023272m.g	N	0.000
cassava19560.m1	Manihot esculenta	cassava19560.m1	N	0.000
cassava40681.m1	Manihot esculenta	cassava40681.m1	N	0.000
cassava421.valid.m1	Manihot esculenta	cassava421.valid.m1	N	0.000
Ca_07237	Cicer arietinum	Ca_07237	N	0.000
chr3.CM0452.130.nd	Lotus japonicus	chr3.CM0452.130.nd	N	0.000
Ciclev10005012m.g	Citrus clementina	Ciclev10005012m.g	N	0.000
Cla022214	Citrullus lanatus	Cla022214	N	0.000
Cucsa.338170	Cucumis sativus	Cucsa.338170	N	0.000
Cucsa.353040	Cucumis sativus	Cucsa.353040	I	0.000
Eucgr.A02341	Eucalyptus grandis	Eucgr.A02341	N	0.000
evm.TU.supercontig_129.70	Carica papaya	evm.TU.supercontig_129.70	N	0.000
evm.TU.supercontig_224.4	Carica papaya	evm.TU.supercontig_224.4	N	0.000
evm.TU.supercontig_99.39	Carica papaya	evm.TU.supercontig_99.39	N	0.000
F775_10869	Aegilops tauschii	F775_10869	N	0.000
fgenesh2_kg.4__2311__AT2G41710.2	Arabidopsis lyrata	fgenesh2_kg.4__2311__AT2G41710.2	N	0.000
gene02470-v1.0-hybrid	Fragaria vesca	gene02470-v1.0-hybrid	N	0.000
GLYMA02G33090	Glycine max	GLYMA02G33090	N	0.000
GLYMA03G29240	Glycine max	GLYMA03G29240	N	0.000
GLYMA19G31960	Glycine max	GLYMA19G31960	N	0.000
Gorai.003G091500	Gossypium raimondii	Gorai.003G091500	N	0.000
GRMZM2G013657	Zea mays	GRMZM2G013657	N	0.000
GRMZM2G146688	Zea mays	GRMZM2G146688	N	0.000
LjSGA_012098.1	Lotus japonicus	LjSGA_012098.1	N	0.000
LPERR05G11930	Leersia perrieri	LPERR05G11930	N	0.000
Lus10000965.g	Linum usitatissimum	Lus10000965.g	N	0.000
Lus10011730.g	Linum usitatissimum	Lus10011730.g	N	0.000
Lus10039650.g	Linum usitatissimum	Lus10039650.g	N	0.000
Lus10040140.g	Linum usitatissimum	Lus10040140.g	N	0.000
MDP0000314518	Malus domestica	MDP0000314518	N	0.000
MDP0000803527	Malus domestica	MDP0000803527	N	0.000
mgf017600m	Mimulus guttatus	mgf017600m	N	0.000
mgf019897m	Mimulus guttatus	mgf019897m	N	0.000
MLOC_7325	Hordeum vulgare	MLOC_7325	N	0.000
MTR_7g091390	Medicago truncatula	MTR_7g091390	N	0.000
OB03G42600	Oryza brachyantha	OB03G42600	N	0.000
OB05G22940	Oryza brachyantha	OB05G22940	N	0.000
OB06G31060	Oryza brachyantha	OB06G31060	N	0.000
OBART05G15060	Oryza barthii	OBART05G15060	N	0.000
OBART06G23380	Oryza barthii	OBART06G23380	N	0.000
OGLUM05G15890	Oryza glumaepatula	OGLUM05G15890	N	0.000
OGLUM06G03000	Oryza glumaepatula	OGLUM06G03000	N	0.000
OLONG_002212	Oryza longistaminata	OLONG_002212	N	0.000
OLONG_020459	Oryza longistaminata	OLONG_020459	N	0.000
OMERI05G13370	Oryza meridionalis	OMERI05G13370	N	0.000
OMERI06G23370	Oryza meridionalis	OMERI06G23370	N	0.000
ONIVA05G15390	Oryza nivara	ONIVA05G15390	N	0.000
OPUNC05G13110	Oryza punctata	OPUNC05G13110	N	0.000
orange1.1g018292m.g	Citrus sinensis	orange1.1g018292m.g	N	0.000
ORGLA05G0129100	Oryza glaberrima	ORGLA05G0129100	N	0.000
ORUFI05G16140	Oryza rufipogon	ORUFI05G16140	N	0.000
Pavir.Ca01410	Panicum virgatum	Pavir.Ca01410	N	0.000
Pavir.Cb01456	Panicum virgatum	Pavir.Cb01456	N	0.000
PDK_20s1313371g002	Phoenix dactylifera	PDK_20s1313371g002	N	0.000
PK12273.1	Cannabis sativa	PK12273.1	N	0.000
PK15670.1	Cannabis sativa	PK15670.1	N	0.000
PK18855.1	Cannabis sativa	PK18855.1	N	0.000
POPTR_0006s04820	Populus trichocarpa	POPTR_0006s04820	N	0.000
POPTR_0016s05670	Populus trichocarpa	POPTR_0016s05670	N	0.000
PRUPE_ppa006202mg	Prunus persica	PRUPE_ppa006202mg	N	0.000
SapurV1A.0037s0030	Salix purpurea	SapurV1A.0037s0030	N	0.000
SapurV1A.3066s0020	Salix purpurea	SapurV1A.3066s0020	N	0.000
Sb09g019190	Sorghum bicolor	Sb09g019190	N	0.000
Si021952m.g	Setaria italica	Si021952m.g	N	0.000
Solyc02g030210.2	Solanum lycopersicum	Solyc02g030210.2	N	0.000
TCM_024554	Theobroma cacao	TCM_024554	N	0.000
Thhalv10016812m.g	Eutrema salsugineum	Thhalv10016812m.g	N	0.000
Traes_6AS_53FA034C9	Triticum aestivum	Traes_6AS_53FA034C9	N	0.000
TRIUR3_07433	Triticum urartu	TRIUR3_07433	N	0.000
VIT_08s0007g08580	Vitis vinifera	VIT_08s0007g08580	N	0.000

OLONG_012250 (Oryza longistaminata) Dof

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

895 Related TFs

OLONG_012250 **(Oryza longistaminata)
Dof**