Cmyd_10011734 (Chelonia mydas)
E2F

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02319 (E2F_TDP) IPR003316 Cmyd_10011734 T173700_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
E2F7
M02960_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Jolma et al.(2013)
E2F7_1 		0.956 0.956
E2F7
M04705_2.00 		Homo sapiens
WTTTGGCGGGAAAN
NTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_HT-SELEX 		0.956 0.956
E2F7
M09033_2.00 		Homo sapiens
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_HUMAN.H11MO.0.B 		0.956 0.956
E2f7
M09040_2.00 		Mus musculus
NDGGCGGGRRNDV
BHNYYCCCGCCHN		 Misc
Kulakovskiy et al.(2013)
E2F7_MOUSE.H11MO.0.C 		0.956 0.956
E2F7
M09522_2.00 		Homo sapiens
NSGCGSGAAMNN
NNKTTCSCGCSN		 Misc
Heinz et al.(2010)
Hela-E2F7_GSE32673 		0.956 0.956
E2F7
M04706_2.00 		Homo sapiens
WTTTGGCGGGAAAH
DTTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F7_eDBD_Methyl-HT-SELEX 		0.956 0.956
E2F8
M02959_2.00 		Homo sapiens
TTTGGCGGGAAA
TTTCCCGCCAAA		 SELEX
Jolma et al.(2013)
E2F8_1 		0.801 0.801
E2F8
M04703_2.00 		Homo sapiens
WDKTGGCGGGARNN
NNYTCCCGCCAMHW		 SELEX
Yin et al.(2017)
E2F8_eDBD_HT-SELEX 		0.801 0.801
E2F8
M04704_2.00 		Homo sapiens
WTTTGGCGGGAAWN
NWTTCCCGCCAAAW		 SELEX
Yin et al.(2017)
E2F8_eDBD_Methyl-HT-SELEX 		0.801 0.801
E2FE
M01958_2.00 		Arabidopsis thaliana
HDSGCGCSHD
HDSGCGCSHD		 PBM
Weirauch et al.(2014)
pTH8176 		0.603 0.603
E2FE
M06873_2.00 		Arabidopsis thaliana
TTTTGGCGGGAAAWWNWNDDN
NHHNWNWWTTTCCCGCCAAAA		 Dap-seq
OMalley et al.(2016)
DEL1_col_a 		0.603 0.603
E2FE
M06874_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL1_colamp_a 		0.603 0.603
E2FD
M06875_2.00 		Arabidopsis thaliana
DWWHDDTTTTGGCGGGAAAW
WTTTCCCGCCAAAAHHDWWH		 Dap-seq
OMalley et al.(2016)
DEL2_col_a 		0.529 0.529
E2FD
M06876_2.00 		Arabidopsis thaliana
DTTTTGGCGGGAAAA
TTTTCCCGCCAAAAH		 Dap-seq
OMalley et al.(2016)
DEL2_colamp_a 		0.529 0.529
E2FD
M10442_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L1_Q2 		0.529 0.529
E2FD
M10443_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$E2L_Q2 		0.529 0.529
For this family, TFs with SR scores > 0.429 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10011734 E2F 113 181
Cmyd_10011734 E2F 252 336

Links

Other E2F family TFs
Other Chelonia mydas TFs

358 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_18459 Ancylostoma caninum ANCCAN_18459 I
ASU_10946 Ascaris suum ASU_10946 I
Bm14724 Brugia malayi Bm14724 I
BTMF_0000273701 Brugia timori BTMF_0000273701 I
CBG07552 Caenorhabditis briggsae CBG07552 I
CJA13646 Caenorhabditis japonica CJA13646 I
CRE15289 Caenorhabditis remanei CRE15289 I
HCOI02077900 Haemonchus contortus HCOI02077900 I
L596_g27086 Steinernema carpocapsae L596_g27086 I
L889_g29204 Steinernema feltiae L889_g29204 I
L893_g29555 Steinernema glaseri L893_g29555 I
L893_g6878 Steinernema glaseri L893_g6878 I
L898_g4801 Steinernema monticolum L898_g4801 I
LOAG_18352 Loa loa LOAG_18352 I
nAv.1.0.1.g09896 Acanthocheilonema viteae nAv.1.0.1.g09896 I
nDi.2.2.2.g05078 Dirofilaria immitis nDi.2.2.2.g05078 I
NECAME_04545 Necator americanus NECAME_04545 I
nhr-3 Caenorhabditis elegans WBGene00003602 D
nLs.2.1.2.g05858 Litomosoides sigmodontis nLs.2.1.2.g05858 I
nOo.2.0.1.g05901 Onchocerca ochengi nOo.2.0.1.g05901 I
OESDEN_02943 Oesophagostomum dentatum OESDEN_02943 I
OFLC_0000776201 Onchocerca flexuosa OFLC_0000776201 I
PPA02306 Pristionchus pacificus PPA02306 I
PTRK_0000775900 Parastrongyloides trichosuri PTRK_0000775900 I
scaffold178-EXSNAP2012.20 Pristionchus exspectatus scaffold178-EXSNAP2012.20 N
SMUV_0000428701 Syphacia muris SMUV_0000428701 I
SPAL_0001157400 Strongyloides papillosus SPAL_0001157400 I
SSTP_0000217700 Strongyloides stercoralis SSTP_0000217700 I
SVE_1633700 Strongyloides venezuelensis SVE_1633700 I
TCLT_0000079701 Thelazia callipaeda TCLT_0000079701 I
TCNE_0001780601 Toxocara canis TCNE_0001780601 I
TELCIR_01879 Teladorsagia circumcincta TELCIR_01879 I
WBGene00241910 Onchocerca volvulus WBGene00241910 I
WUBG_08518 Wuchereria bancrofti WUBG_08518 I