cassava31126.valid.m1 (Manihot esculenta)
FAR1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03101 (FAR1) IPR004330 cassava31126.valid.m1 T181046_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FHY3
M08114_2.00 		Arabidopsis thaliana
NHCACGCGCTNN
NNAGCGCGTGDN		 ChIP-seq
Mathelier et al.(2014)
MA0557.1 		0.900 0.900
FHY3
M09540_2.00 		Arabidopsis thaliana
NHSACGCGCBNN
NNVGCGCGTSDN		 Misc
Heinz et al.(2010)
Arabidopsis-FHY3_GSE30711 		0.900 0.900
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava31126.valid.m1 FAR1 85 187

Links

Other FAR1 family TFs
Other Manihot esculenta TFs

47 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29830.m001444 Ricinus communis 29830.m001444 N
AMTR_s00044p00165760 Amborella trichopoda AMTR_s00044p00165760 N
AMTR_s00057p00091350 Amborella trichopoda AMTR_s00057p00091350 I
Aquca_015_00350 Aquilegia coerulea Aquca_015_00350 N
Bo1g006340 Brassica oleracea Bo1g006340 N
Bostr.7867s1419 Boechera stricta Bostr.7867s1419 N
Bra011626 Brassica rapa Bra011626 N
Cagra.2350s0102 Capsella grandiflora Cagra.2350s0102 N
Carubv10005148m.g Capsella rubella Carubv10005148m.g N
cassava26650.m1 Manihot esculenta cassava26650.m1 N
chr2.CM0272.20.nd Lotus japonicus chr2.CM0272.20.nd N
Ciclev10027531m.g Citrus clementina Ciclev10027531m.g N
Cla014580 Citrullus lanatus Cla014580 N
Cucsa.044270 Cucumis sativus Cucsa.044270 N
fgenesh2_kg.7__520__AT4G35590.1 Arabidopsis lyrata fgenesh2_kg.7__520__AT4G35590.1 N
gene13055-v1.0-hybrid Fragaria vesca gene13055-v1.0-hybrid N
GLYMA01G36360 Glycine max GLYMA01G36360 N
GLYMA11G09080 Glycine max GLYMA11G09080 N
Gorai.003G002500 Gossypium raimondii Gorai.003G002500 N
GSMUA_Achr8G13370_001 Musa acuminata GSMUA_Achr8G13370_001 N
MDP0000125133 Malus domestica MDP0000125133 N
MDP0000192895 Malus domestica MDP0000192895 N
MDP0000215412 Malus domestica MDP0000215412 N
MDP0000291622 Malus domestica MDP0000291622 N
MTR_5g024070 Medicago truncatula MTR_5g024070 N
orange1.1g039420m.g Citrus sinensis orange1.1g039420m.g N
Pm026816 Prunus mume Pm026816 N
PRUPE_ppa011563mg Prunus persica PRUPE_ppa011563mg N
RKD5 Arabidopsis thaliana AT4G35590 N
SapurV1A.0085s0060 Salix purpurea SapurV1A.0085s0060 N
TCM_000070 Theobroma cacao TCM_000070 N
Thhalv10027037m.g Eutrema salsugineum Thhalv10027037m.g N
VIT_04s0044g00060 Vitis vinifera VIT_04s0044g00060 N