CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GL23472 *(Drosophila persimilis)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00250 (Forkhead)	IPR001766	FBgn0161062	T187509_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
fkh M03734_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fkh_1	0.893	1.000
fkh M03735_2.00	Drosophila melanogaster	HWASAATAAYAWT	AATRTTATTSTWD	SELEX Nitta et al.(2015) fkh_2	0.893	1.000
fkh M06473_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Mathelier et al.(2014) MA0446.1	0.893	1.000
fkh M06194_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	B1H Zhu et al.(2011) fkh_NAR_FBgn0000659	0.893	1.000
fkh M08200_2.00	Drosophila melanogaster	NTRDDYAAACA	TGTTTRHHYAN	ChIP-seq Contrino et al.(2012) Mf15	0.893	1.000
fkh M09668_2.00	Drosophila melanogaster	TRTTTRCAHAAG	CTTDTGYAAAYA	Misc Kulakovskiy et al.(2009) fkh	0.893	1.000
Foxa2 M00162_2.00	Mus musculus	GTAAAYAW	WTRTTTAC	PBM Badis et al.(2009) Foxa2_2830	0.835	0.907
FOXA2 M04815_2.00	Homo sapiens	NHVNRYMAATATTKACNNDN	NHNNGTMAATATTKRYNBDN	SELEX Yin et al.(2017) FOXA2_eDBD_HT-SELEX	0.835	0.907
Foxa2 M08121_2.00	Mus musculus	TRTTTACWYWDN	NHWRWGTAAAYA	ChIP-seq Mathelier et al.(2014) MA0047.2	0.835	0.907
FOXA2 M07959_2.00	Homo sapiens	NNWRWGYAAAYANNN	NNNTRTTTRCWYWNN	ChIP-seq Gerstein et al.(2012) HepG2_FOXA2_HudsonAlpha	0.835	0.907
FOXA2 M09088_2.00	Homo sapiens	NHWRWGTAAACA	TGTTTACWYWDN	Misc Kulakovskiy et al.(2013) FOXA2_HUMAN.H11MO.0.A	0.835	0.907
Foxa2 M09104_2.00	Mus musculus	BNHTRTTKACWYW	WRWGTMAAYADNV	Misc Kulakovskiy et al.(2013) FOXA2_MOUSE.H11MO.0.A	0.835	0.907
FOXA2 M09542_2.00	Homo sapiens	WVWGTMAACANV	BNTGTTKACWBW	Misc Heinz et al.(2010) Liver-Foxa2_GSE25694	0.835	0.907
FOXA2 M10540_2.00	Homo sapiens	WAARYAAAYADKNMV	BKNMHTRTTTRYTTW	Transfac Matys et al.(2006) V$HNF3B_01	0.835	0.907
FOXA2 M10541_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3B_Q6	0.835	0.907
AAA20679 M10575_2.00	Xenopus laevis	WNWGTMAACAWWMW	WKWWTGTTKACWNW	Transfac Matys et al.(2006) V$XFD3_01	0.835	0.907
FOXA2 M04816_2.00	Homo sapiens	NWRNRYMAATATTKACWNWN	NWNWGTMAATATTKRYNYWN	SELEX Yin et al.(2017) FOXA2_eDBD_Methyl-HT-SELEX	0.835	0.907
FOXA1 M04817_2.00	Homo sapiens	NTRTKTACMYWN	NWRKGTAMAYAN	SELEX Yin et al.(2017) FOXA1_eDBD_HT-SELEX	0.820	0.884
FOXA1 M04819_2.00	Homo sapiens	BVYTAWGTAAACAAWN	NWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_1	0.820	0.884
FOXA1 M04820_2.00	Homo sapiens	HWRWRYAAATATTKACWYWR	YWRWGTMAATATTTRYWYWD	SELEX Yin et al.(2017) FOXA1_FL_HT-SELEX_2	0.820	0.884
FOXA1 M08117_2.00	Homo sapiens	NNNNTRTTTACWYWD	HWRWGTAAAYANNNN	ChIP-seq Mathelier et al.(2014) MA0148.3	0.820	0.884
FOXA1 M07960_2.00	Homo sapiens	NNYWRWGYAAACANN	NNTGTTTRCWYWRNN	ChIP-seq Gerstein et al.(2012) ECC-1_FOXA1_HudsonAlpha	0.820	0.884
FOXA1 M07961_2.00	Homo sapiens	HWRWGTAAAYA	TRTTTACWYWD	ChIP-seq Gerstein et al.(2012) HepG2_FOXA1_HudsonAlpha	0.820	0.884
FOXA1 M07962_2.00	Homo sapiens	NWVWGTAAACA	TGTTTACWBWN	ChIP-seq Gerstein et al.(2012) T-47D_FOXA1_HudsonAlpha	0.820	0.884
FOXA1 M08199_2.00	Homo sapiens	BWRDGTAAACANN	NNTGTTTACHYWV	ChIP-seq Contrino et al.(2012) Mv69	0.820	0.884
FOXA1 M08028_2.00	Homo sapiens	WRWRYAAAYA	TRTTTRYWYW	ChIP-seq Chen et al.(2011) GSE15244_FoxA1	0.820	0.884
FOXA1 M09090_2.00	Homo sapiens	VHWRWGTAAACA	TGTTTACWYWDB	Misc Kulakovskiy et al.(2013) FOXA1_HUMAN.H11MO.0.A	0.820	0.884
Foxa1 M09103_2.00	Mus musculus	TRTTKACWYW	WRWGTMAAYA	Misc Kulakovskiy et al.(2013) FOXA1_MOUSE.H11MO.0.A	0.820	0.884
FOXA1 M09544_2.00	Homo sapiens	WGCCAARRYAAAYANN	NNTRTTTRYYTTGGCW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_2	0.820	0.884
FOXA1 M09543_2.00	Homo sapiens	WRWGTAAACA	TGTTTACWYW	Misc Heinz et al.(2010) LNCAP-FOXA1_GSE27824_1	0.820	0.884
FOXA1 M09545_2.00	Homo sapiens	WRWGTAAAYA	TRTTTACWYW	Misc Heinz et al.(2010) MCF7-FOXA1_GSE26831	0.820	0.884
FOXA1 M10542_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_02	0.820	0.884
FOXA1 M10543_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXA1_03	0.820	0.884
FOXA1 M10544_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_01	0.820	0.884
FOXA1 M10545_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3ALPHA_Q6	0.820	0.884
FOXA1 M10546_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3A_Q6	0.820	0.884
FOXA1 M04818_2.00	Homo sapiens	NWRDGYMAAYAW	WTRTTKRCHYWN	SELEX Yin et al.(2017) FOXA1_eDBD_Methyl-HT-SELEX	0.820	0.884
FOXA1 M04821_2.00	Homo sapiens	BVYTAWGTAAACAAWV	BWTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_1	0.820	0.884
FOXA1 M04822_2.00	Homo sapiens	YTRWRYAAATATTTACWYAR	YTRWGTAAATATTTRYWYAR	SELEX Yin et al.(2017) FOXA1_FL_Methyl-HT-SELEX_2	0.820	0.884
Q2L6N7_PELSI M01990_2.00	Trionyx sinensis	KTRTTTACA	TGTAAAYAM	PBM Weirauch et al.(2014) pTH5334	0.808	0.826
FOXA3 M04831_2.00	Homo sapiens	BVYTAWGTAAACAAAN	NTTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_1	0.796	0.849
FOXA3 M04832_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_2	0.796	0.849
FOXA3 M09096_2.00	Homo sapiens	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_HUMAN.H11MO.0.B	0.796	0.849
Foxa3 M09106_2.00	Mus musculus	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_MOUSE.H11MO.0.A	0.796	0.849
FOXA3 M10557_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3G_Q4	0.796	0.849
FOXA3 M04833_2.00	Homo sapiens	CVYTAWGTAAACAAWB	VWTTGTTTACWTARBG	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_1	0.796	0.849
FOXA3 M04834_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_2	0.796	0.849
pha-4 M08123_2.00	Caenorhabditis elegans	WRWGYAAAYA	TRTTTRCWYW	ChIP-seq Mathelier et al.(2014) MA0546.1	0.751	0.814
pha-4 M08201_2.00	Caenorhabditis elegans	GTAAACAR	YTGTTTAC	ChIP-seq Contrino et al.(2012) Mw164	0.751	0.814
pha-4 M09548_2.00	Caenorhabditis elegans	RYAMAYAN	NTRTKTRY	Misc Heinz et al.(2010) cElegans-Embryos-PHA4_modEncode	0.751	0.814
Foxb1 M01983_2.00	Mus musculus	TRTTKAYWYW	WRWRTMAAYA	PBM Weirauch et al.(2014) pTH2808	0.720	0.756
FOXB1 M03028_2.00	Homo sapiens	GAATGACACRGCKV	BMGCYGTGTCATTC	SELEX Jolma et al.(2013) FOXB1_1	0.720	0.756
FOXB1 M03029_2.00	Homo sapiens	WRWGTMAATATTKACWYW	WRWGTMAATATTKACWYW	SELEX Jolma et al.(2013) FOXB1_2	0.720	0.756
FOXB1 M03030_2.00	Homo sapiens	WTRTTKACWTW	WAWGTMAAYAW	SELEX Jolma et al.(2013) FOXB1_3	0.720	0.756
FOXB1 M03031_2.00	Homo sapiens	NTRTTTACW	WGTAAAYAN	SELEX Jolma et al.(2013) FOXB1_4	0.720	0.756
FOXB1 M04837_2.00	Homo sapiens	NWRDGYMAATATTKRCWYWD	HWRWGYMAATATTKRCHYWN	SELEX Yin et al.(2017) FOXB1_eDBD_HT-SELEX	0.720	0.756
FOXB1 M04838_2.00	Homo sapiens	NWRNGYMAATATTKRCDYWD	HWRHGYMAATATTKRCNYWN	SELEX Yin et al.(2017) FOXB1_eDBD_Methyl-HT-SELEX	0.720	0.756
fd96Ca M03743_2.00	Drosophila melanogaster	WRWGYMAATATTKRCWYW	WRWGYMAATATTKRCWYW	SELEX Nitta et al.(2015) fd96Ca_1	0.701	0.674
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.671	0.640
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
FBpp0187579	Forkhead	181	270	KPPYSYISLITMAIQNNPTRMLTLSEIYQFIMDLFPFYRQNQQRWQNSIRHSLSFNDCFVKIPRTPDKPGKGSFWTLHPDSGNMFENGCY

Links
Other Forkhead family TFs
Other *Drosophila persimilis* TFs

566 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
30006.m000282	Ricinus communis	30006.m000282	N	0.000
30170.m013669	Ricinus communis	30170.m013669	N	0.000
AMTR_s00159p00062070	Amborella trichopoda	AMTR_s00159p00062070	N	0.000
Aquca_009_00241	Aquilegia coerulea	Aquca_009_00241	N	0.000
AT2G41710	Arabidopsis thaliana	AT2G41710	N	0.000
BBM	Vitis vinifera	VIT_04s0023g00950	N	0.000
BGIOSGA019793	Oryza indica	BGIOSGA019793	N	0.000
BGIOSGA023402	Oryza indica	BGIOSGA023402	N	0.000
Bo3g035770	Brassica oleracea	Bo3g035770	N	0.000
Bo4g013420	Brassica oleracea	Bo4g013420	N	0.000
Bostr.11568s0008	Boechera stricta	Bostr.11568s0008	N	0.000
Bra004641	Brassica rapa	Bra004641	N	0.000
BRADI2G26987	Brachypodium distachyon	BRADI2G26987	N	0.000
Cagra.0914s0005	Capsella grandiflora	Cagra.0914s0005	N	0.000
Carubv10023272m.g	Capsella rubella	Carubv10023272m.g	N	0.000
cassava19560.m1	Manihot esculenta	cassava19560.m1	N	0.000
cassava40681.m1	Manihot esculenta	cassava40681.m1	N	0.000
cassava421.valid.m1	Manihot esculenta	cassava421.valid.m1	N	0.000
chr3.CM0452.130.nd	Lotus japonicus	chr3.CM0452.130.nd	N	0.000
Ciclev10005012m.g	Citrus clementina	Ciclev10005012m.g	N	0.000
Cla022214	Citrullus lanatus	Cla022214	N	0.000
Cucsa.338170	Cucumis sativus	Cucsa.338170	N	0.000
Cucsa.353040	Cucumis sativus	Cucsa.353040	I	0.000
Eucgr.A02341	Eucalyptus grandis	Eucgr.A02341	N	0.000
evm.TU.supercontig_129.70	Carica papaya	evm.TU.supercontig_129.70	N	0.000
evm.TU.supercontig_224.4	Carica papaya	evm.TU.supercontig_224.4	N	0.000
evm.TU.supercontig_99.39	Carica papaya	evm.TU.supercontig_99.39	N	0.000
F775_10869	Aegilops tauschii	F775_10869	N	0.000
fgenesh2_kg.4__2311__AT2G41710.2	Arabidopsis lyrata	fgenesh2_kg.4__2311__AT2G41710.2	N	0.000
gene02470-v1.0-hybrid	Fragaria vesca	gene02470-v1.0-hybrid	N	0.000
GLYMA02G33090	Glycine max	GLYMA02G33090	N	0.000
GLYMA03G29240	Glycine max	GLYMA03G29240	N	0.000
GLYMA19G31960	Glycine max	GLYMA19G31960	N	0.000
Gorai.003G091500	Gossypium raimondii	Gorai.003G091500	N	0.000
GRMZM2G013657	Zea mays	GRMZM2G013657	N	0.000
GRMZM2G146688	Zea mays	GRMZM2G146688	N	0.000
LjSGA_012098.1	Lotus japonicus	LjSGA_012098.1	N	0.000
LPERR05G11930	Leersia perrieri	LPERR05G11930	N	0.000
Lus10000965.g	Linum usitatissimum	Lus10000965.g	N	0.000
Lus10011730.g	Linum usitatissimum	Lus10011730.g	N	0.000
Lus10039650.g	Linum usitatissimum	Lus10039650.g	N	0.000
Lus10040140.g	Linum usitatissimum	Lus10040140.g	N	0.000
MDP0000314518	Malus domestica	MDP0000314518	N	0.000
MDP0000803527	Malus domestica	MDP0000803527	N	0.000
mgf017600m	Mimulus guttatus	mgf017600m	N	0.000
mgf019897m	Mimulus guttatus	mgf019897m	N	0.000
MLOC_7325	Hordeum vulgare	MLOC_7325	N	0.000
MTR_7g091390	Medicago truncatula	MTR_7g091390	N	0.000
OB03G42600	Oryza brachyantha	OB03G42600	N	0.000
OB05G22940	Oryza brachyantha	OB05G22940	N	0.000
OB06G31060	Oryza brachyantha	OB06G31060	N	0.000
OBART05G15060	Oryza barthii	OBART05G15060	N	0.000
OBART06G23380	Oryza barthii	OBART06G23380	N	0.000
OGLUM05G15890	Oryza glumaepatula	OGLUM05G15890	N	0.000
OGLUM06G03000	Oryza glumaepatula	OGLUM06G03000	N	0.000
OLONG_002212	Oryza longistaminata	OLONG_002212	N	0.000
OLONG_020459	Oryza longistaminata	OLONG_020459	N	0.000
OMERI05G13370	Oryza meridionalis	OMERI05G13370	N	0.000
OMERI06G23370	Oryza meridionalis	OMERI06G23370	N	0.000
ONIVA05G15390	Oryza nivara	ONIVA05G15390	N	0.000
OPUNC05G13110	Oryza punctata	OPUNC05G13110	N	0.000
orange1.1g018292m.g	Citrus sinensis	orange1.1g018292m.g	N	0.000
ORGLA05G0129100	Oryza glaberrima	ORGLA05G0129100	N	0.000
ORUFI05G16140	Oryza rufipogon	ORUFI05G16140	N	0.000
Pavir.Ca01410	Panicum virgatum	Pavir.Ca01410	N	0.000
Pavir.Cb01456	Panicum virgatum	Pavir.Cb01456	N	0.000
PDK_20s1313371g002	Phoenix dactylifera	PDK_20s1313371g002	N	0.000
PK12273.1	Cannabis sativa	PK12273.1	N	0.000
PK15670.1	Cannabis sativa	PK15670.1	N	0.000
PK18855.1	Cannabis sativa	PK18855.1	N	0.000
POPTR_0006s04820	Populus trichocarpa	POPTR_0006s04820	N	0.000
POPTR_0016s05670	Populus trichocarpa	POPTR_0016s05670	N	0.000
PRUPE_ppa006202mg	Prunus persica	PRUPE_ppa006202mg	N	0.000
SapurV1A.0037s0030	Salix purpurea	SapurV1A.0037s0030	N	0.000
SapurV1A.3066s0020	Salix purpurea	SapurV1A.3066s0020	N	0.000
Sb09g019190	Sorghum bicolor	Sb09g019190	N	0.000
Si021952m.g	Setaria italica	Si021952m.g	N	0.000
Solyc02g030210.2	Solanum lycopersicum	Solyc02g030210.2	N	0.000
TCM_024554	Theobroma cacao	TCM_024554	N	0.000
Thhalv10016812m.g	Eutrema salsugineum	Thhalv10016812m.g	N	0.000
Traes_6AS_53FA034C9	Triticum aestivum	Traes_6AS_53FA034C9	N	0.000
TRIUR3_07433	Triticum urartu	TRIUR3_07433	N	0.000
VIT_08s0007g08580	Vitis vinifera	VIT_08s0007g08580	N	0.000

GL23472 (Drosophila persimilis) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

566 Related TFs

GL23472 **(Drosophila persimilis)
Forkhead**