Cmyd_10014568 (Chelonia mydas)
Forkhead

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00250 (Forkhead) IPR001766 Cmyd_10014568 T189012_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
FOXA1
M04817_2.00 		Homo sapiens
NTRTKTACMYWN
NWRKGTAMAYAN		 SELEX
Yin et al.(2017)
FOXA1_eDBD_HT-SELEX 		0.886 1.000
FOXA1
M04819_2.00 		Homo sapiens
BVYTAWGTAAACAAWN
NWTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_1 		0.886 1.000
FOXA1
M04820_2.00 		Homo sapiens
HWRWRYAAATATTKACWYWR
YWRWGTMAATATTTRYWYWD		 SELEX
Yin et al.(2017)
FOXA1_FL_HT-SELEX_2 		0.886 1.000
FOXA1
M08117_2.00 		Homo sapiens
NNNNTRTTTACWYWD
HWRWGTAAAYANNNN		 ChIP-seq
Mathelier et al.(2014)
MA0148.3 		0.886 1.000
FOXA1
M07960_2.00 		Homo sapiens
NNYWRWGYAAACANN
NNTGTTTRCWYWRNN		 ChIP-seq
Gerstein et al.(2012)
ECC-1_FOXA1_HudsonAlpha 		0.886 1.000
FOXA1
M07961_2.00 		Homo sapiens
HWRWGTAAAYA
TRTTTACWYWD		 ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA1_HudsonAlpha 		0.886 1.000
FOXA1
M07962_2.00 		Homo sapiens
NWVWGTAAACA
TGTTTACWBWN		 ChIP-seq
Gerstein et al.(2012)
T-47D_FOXA1_HudsonAlpha 		0.886 1.000
FOXA1
M08199_2.00 		Homo sapiens
BWRDGTAAACANN
NNTGTTTACHYWV		 ChIP-seq
Contrino et al.(2012)
Mv69 		0.886 1.000
FOXA1
M08028_2.00 		Homo sapiens
WRWRYAAAYA
TRTTTRYWYW		 ChIP-seq
Chen et al.(2011)
GSE15244_FoxA1 		0.886 1.000
FOXA1
M09090_2.00 		Homo sapiens
VHWRWGTAAACA
TGTTTACWYWDB		 Misc
Kulakovskiy et al.(2013)
FOXA1_HUMAN.H11MO.0.A 		0.886 1.000
Foxa1
M09103_2.00 		Mus musculus
TRTTKACWYW
WRWGTMAAYA		 Misc
Kulakovskiy et al.(2013)
FOXA1_MOUSE.H11MO.0.A 		0.886 1.000
FOXA1
M09544_2.00 		Homo sapiens
WGCCAARRYAAAYANN
NNTRTTTRYYTTGGCW		 Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_2 		0.886 1.000
FOXA1
M09543_2.00 		Homo sapiens
WRWGTAAACA
TGTTTACWYW		 Misc
Heinz et al.(2010)
LNCAP-FOXA1_GSE27824_1 		0.886 1.000
FOXA1
M09545_2.00 		Homo sapiens
WRWGTAAAYA
TRTTTACWYW		 Misc
Heinz et al.(2010)
MCF7-FOXA1_GSE26831 		0.886 1.000
FOXA1
M10542_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXA1_02 		0.886 1.000
FOXA1
M10543_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$FOXA1_03 		0.886 1.000
FOXA1
M10544_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3A_01 		0.886 1.000
FOXA1
M10545_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3ALPHA_Q6 		0.886 1.000
FOXA1
M10546_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3A_Q6 		0.886 1.000
FOXA1
M04818_2.00 		Homo sapiens
NWRDGYMAAYAW
WTRTTKRCHYWN		 SELEX
Yin et al.(2017)
FOXA1_eDBD_Methyl-HT-SELEX 		0.886 1.000
FOXA1
M04821_2.00 		Homo sapiens
BVYTAWGTAAACAAWV
BWTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_1 		0.886 1.000
FOXA1
M04822_2.00 		Homo sapiens
YTRWRYAAATATTTACWYAR
YTRWGTAAATATTTRYWYAR		 SELEX
Yin et al.(2017)
FOXA1_FL_Methyl-HT-SELEX_2 		0.886 1.000
Q2L6N7_PELSI
M01990_2.00 		Trionyx sinensis
KTRTTTACA
TGTAAAYAM		 PBM
Weirauch et al.(2014)
pTH5334 		0.874 0.942
FOXA3
M04831_2.00 		Homo sapiens
BVYTAWGTAAACAAAN
NTTTGTTTACWTARBV		 SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_1 		0.854 0.953
FOXA3
M04832_2.00 		Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD		 SELEX
Yin et al.(2017)
FOXA3_FL_HT-SELEX_2 		0.854 0.953
FOXA3
M09096_2.00 		Homo sapiens
HWRWGTMAAYADN
NHTRTTKACWYWD		 Misc
Kulakovskiy et al.(2013)
FOXA3_HUMAN.H11MO.0.B 		0.854 0.953
Foxa3
M09106_2.00 		Mus musculus
HWRWGTMAAYADN
NHTRTTKACWYWD		 Misc
Kulakovskiy et al.(2013)
FOXA3_MOUSE.H11MO.0.A 		0.854 0.953
FOXA3
M10557_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3G_Q4 		0.854 0.953
FOXA3
M04833_2.00 		Homo sapiens
CVYTAWGTAAACAAWB
VWTTGTTTACWTARBG		 SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_1 		0.854 0.953
FOXA3
M04834_2.00 		Homo sapiens
HWRWGYAAATATTKACWYWD
HWRWGTMAATATTTRCWYWD		 SELEX
Yin et al.(2017)
FOXA3_FL_Methyl-HT-SELEX_2 		0.854 0.953
Foxa2
M00162_2.00 		Mus musculus
GTAAAYAW
WTRTTTAC		 PBM
Badis et al.(2009)
Foxa2_2830 		0.842 0.930
FOXA2
M04815_2.00 		Homo sapiens
NHVNRYMAATATTKACNNDN
NHNNGTMAATATTKRYNBDN		 SELEX
Yin et al.(2017)
FOXA2_eDBD_HT-SELEX 		0.842 0.930
Foxa2
M08121_2.00 		Mus musculus
TRTTTACWYWDN
NHWRWGTAAAYA		 ChIP-seq
Mathelier et al.(2014)
MA0047.2 		0.842 0.930
FOXA2
M07959_2.00 		Homo sapiens
NNWRWGYAAAYANNN
NNNTRTTTRCWYWNN		 ChIP-seq
Gerstein et al.(2012)
HepG2_FOXA2_HudsonAlpha 		0.842 0.930
FOXA2
M09088_2.00 		Homo sapiens
NHWRWGTAAACA
TGTTTACWYWDN		 Misc
Kulakovskiy et al.(2013)
FOXA2_HUMAN.H11MO.0.A 		0.842 0.930
Foxa2
M09104_2.00 		Mus musculus
BNHTRTTKACWYW
WRWGTMAAYADNV		 Misc
Kulakovskiy et al.(2013)
FOXA2_MOUSE.H11MO.0.A 		0.842 0.930
FOXA2
M09542_2.00 		Homo sapiens
WVWGTMAACANV
BNTGTTKACWBW		 Misc
Heinz et al.(2010)
Liver-Foxa2_GSE25694 		0.842 0.930
FOXA2
M10540_2.00 		Homo sapiens
WAARYAAAYADKNMV
BKNMHTRTTTRYTTW		 Transfac
Matys et al.(2006)
V$HNF3B_01 		0.842 0.930
FOXA2
M10541_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HNF3B_Q6 		0.842 0.930
AAA20679
M10575_2.00 		Xenopus laevis
WNWGTMAACAWWMW
WKWWTGTTKACWNW		 Transfac
Matys et al.(2006)
V$XFD3_01 		0.842 0.930
FOXA2
M04816_2.00 		Homo sapiens
NWRNRYMAATATTKACWNWN
NWNWGTMAATATTKRYNYWN		 SELEX
Yin et al.(2017)
FOXA2_eDBD_Methyl-HT-SELEX 		0.842 0.930
fkh
M03734_2.00 		Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW		 SELEX
Nitta et al.(2015)
fkh_1 		0.820 0.884
fkh
M03735_2.00 		Drosophila melanogaster
HWASAATAAYAWT
AATRTTATTSTWD		 SELEX
Nitta et al.(2015)
fkh_2 		0.820 0.884
fkh
M06473_2.00 		Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN		 B1H
Mathelier et al.(2014)
MA0446.1 		0.820 0.884
fkh
M06194_2.00 		Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN		 B1H
Zhu et al.(2011)
fkh_NAR_FBgn0000659 		0.820 0.884
fkh
M08200_2.00 		Drosophila melanogaster
NTRDDYAAACA
TGTTTRHHYAN		 ChIP-seq
Contrino et al.(2012)
Mf15 		0.820 0.884
fkh
M09668_2.00 		Drosophila melanogaster
TRTTTRCAHAAG
CTTDTGYAAAYA		 Misc
Kulakovskiy et al.(2009)
fkh 		0.820 0.884
pha-4
M08123_2.00 		Caenorhabditis elegans
WRWGYAAAYA
TRTTTRCWYW		 ChIP-seq
Mathelier et al.(2014)
MA0546.1 		0.817 0.860
pha-4
M08201_2.00 		Caenorhabditis elegans
GTAAACAR
YTGTTTAC		 ChIP-seq
Contrino et al.(2012)
Mw164 		0.817 0.860
pha-4
M09548_2.00 		Caenorhabditis elegans
RYAMAYAN
NTRTKTRY		 Misc
Heinz et al.(2010)
cElegans-Embryos-PHA4_modEncode 		0.817 0.860
Foxb1
M01983_2.00 		Mus musculus
TRTTKAYWYW
WRWRTMAAYA		 PBM
Weirauch et al.(2014)
pTH2808 		0.694 0.733
FOXB1
M03028_2.00 		Homo sapiens
GAATGACACRGCKV
BMGCYGTGTCATTC		 SELEX
Jolma et al.(2013)
FOXB1_1 		0.694 0.733
FOXB1
M03029_2.00 		Homo sapiens
WRWGTMAATATTKACWYW
WRWGTMAATATTKACWYW		 SELEX
Jolma et al.(2013)
FOXB1_2 		0.694 0.733
FOXB1
M03030_2.00 		Homo sapiens
WTRTTKACWTW
WAWGTMAAYAW		 SELEX
Jolma et al.(2013)
FOXB1_3 		0.694 0.733
FOXB1
M03031_2.00 		Homo sapiens
NTRTTTACW
WGTAAAYAN		 SELEX
Jolma et al.(2013)
FOXB1_4 		0.694 0.733
FOXB1
M04837_2.00 		Homo sapiens
NWRDGYMAATATTKRCWYWD
HWRWGYMAATATTKRCHYWN		 SELEX
Yin et al.(2017)
FOXB1_eDBD_HT-SELEX 		0.694 0.733
FOXB1
M04838_2.00 		Homo sapiens
NWRNGYMAATATTKRCDYWD
HWRHGYMAATATTKRCNYWN		 SELEX
Yin et al.(2017)
FOXB1_eDBD_Methyl-HT-SELEX 		0.694 0.733
fd96Ca
M03743_2.00 		Drosophila melanogaster
WRWGYMAATATTKRCWYW
WRWGYMAATATTKRCWYW		 SELEX
Nitta et al.(2015)
fd96Ca_1 		0.686 0.698
For this family, TFs with SR scores > 0.664 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10014568 Forkhead 129 218

Links

Other Forkhead family TFs
Other Chelonia mydas TFs

502 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30174.m008944 Ricinus communis 30174.m008944 I
BGIOSGA015954 Oryza indica BGIOSGA015954 I
BGIOSGA029420 Oryza indica BGIOSGA029420 I
Bra003986 Brassica rapa Bra003986 I
Bra007875 Brassica rapa Bra007875 I
Bra029366 Brassica rapa Bra029366 I
Bra032973 Brassica rapa Bra032973 N
Cagra.4247s0002 Capsella grandiflora Cagra.4247s0002 I
cassava20535.m1 Manihot esculenta cassava20535.m1 I
cassava35071.m1 Manihot esculenta cassava35071.m1 I
Ca_25231 Cicer arietinum Ca_25231 I
evm.TU.supercontig_1815.2 Carica papaya evm.TU.supercontig_1815.2 I
GLYMA07G29015 Glycine max GLYMA07G29015 I
GRMZM2G107031 Zea mays GRMZM2G107031 I
GSMUA_Achr11G17370_001 Musa acuminata GSMUA_Achr11G17370_001 I
GSMUA_Achr2G10690_001 Musa acuminata GSMUA_Achr2G10690_001 I
GSMUA_Achr3G12320_001 Musa acuminata GSMUA_Achr3G12320_001 I
GSMUA_Achr4G27220_001 Musa acuminata GSMUA_Achr4G27220_001 I
GSMUA_Achr5G03320_001 Musa acuminata GSMUA_Achr5G03320_001 I
GSMUA_Achr6G07930_001 Musa acuminata GSMUA_Achr6G07930_001 I
GSMUA_AchrUn_randomG08350_001 Musa acuminata GSMUA_AchrUn_randomG08350_001 I
LjSGA_035107.1 Lotus japonicus LjSGA_035107.1 I
LPERR08G19160 Leersia perrieri LPERR08G19160 I
LPERR09G12890 Leersia perrieri LPERR09G12890 I
Lus10008444.g Linum usitatissimum Lus10008444.g I
Lus10008621.g Linum usitatissimum Lus10008621.g I
Lus10035193.g Linum usitatissimum Lus10035193.g I
MLOC_24269 Hordeum vulgare MLOC_24269 I
MLOC_60577 Hordeum vulgare MLOC_60577 I
MLOC_61513 Hordeum vulgare MLOC_61513 I
OB08G29160 Oryza brachyantha OB08G29160 I
OBART08G22390 Oryza barthii OBART08G22390 I
OBART10G07150 Oryza barthii OBART10G07150 N
OGLUM04G24370 Oryza glumaepatula OGLUM04G24370 N
OGLUM08G23730 Oryza glumaepatula OGLUM08G23730 I
OGLUM09G17360 Oryza glumaepatula OGLUM09G17360 I
OLONG_002160 Oryza longistaminata OLONG_002160 I
OLONG_019922 Oryza longistaminata OLONG_019922 I
OMERI08G17330 Oryza meridionalis OMERI08G17330 I
OMERI09G12430 Oryza meridionalis OMERI09G12430 I
ONIVA08G25460 Oryza nivara ONIVA08G25460 I
ONIVA09G17830 Oryza nivara ONIVA09G17830 I
OPUNC08G20520 Oryza punctata OPUNC08G20520 I
OPUNC09G15210 Oryza punctata OPUNC09G15210 I
ORGLA09G0132500 Oryza glaberrima ORGLA09G0132500 I
ORUFI01G09990 Oryza rufipogon ORUFI01G09990 I
ORUFI08G24920 Oryza rufipogon ORUFI08G24920 I
ORUFI09G18130 Oryza rufipogon ORUFI09G18130 I
OS09G0521300 Oryza sativa OS09G0521300 I
Pavir.Ca00220 Panicum virgatum Pavir.Ca00220 I
Pavir.J05134 Panicum virgatum Pavir.J05134 I
Pavir.J12088 Panicum virgatum Pavir.J12088 I
PCF2 Oryza sativa OS08G0544800 D
PCF2 Oryza indica BGIOSGA026548 I
PGSC0003DMG400000597 Solanum tuberosum PGSC0003DMG400000597 I
PRUPE_ppa024948mg Prunus persica PRUPE_ppa024948mg I
Si010765m.g Setaria italica Si010765m.g I
Traes_4AL_E57587E16 Triticum aestivum Traes_4AL_E57587E16 I