CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cmyd_10017566 *(Chelonia mydas)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	Cmyd_10017566	T189022_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
FOXG1 M01978_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH5501	0.758	1.000
Foxg1 M00791_2.00	Mus musculus	NNNNMHAYAN	NTRTDKNNNN	PBM Weirauch et al.(2013) pTH2846	0.758	1.000
FOXG1 M03032_2.00	Homo sapiens	RTAAACAATDGTAAACA	TGTTTACHATTGTTTAY	SELEX Jolma et al.(2013) FOXG1_1	0.758	1.000
FOXG1 M03033_2.00	Homo sapiens	RCGGACACAATR	YATTGTGTCCGY	SELEX Jolma et al.(2013) FOXG1_2	0.758	1.000
Foxg1 M03052_2.00	Mus musculus	ATAAACAAVTGTMAACA	TGTTKACABTTGTTTAT	SELEX Jolma et al.(2013) Foxg1_1	0.758	1.000
Foxg1 M03053_2.00	Mus musculus	MHGGACACAATC	GATTGTGTCCDK	SELEX Jolma et al.(2013) Foxg1_2	0.758	1.000
Foxg1 M03054_2.00	Mus musculus	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) Foxg1_3	0.758	1.000
FOXG1 M04839_2.00	Homo sapiens	NACRYMMACAH	DTGTKKRYGTN	SELEX Yin et al.(2017) FOXG1_eDBD_HT-SELEX	0.758	1.000
FOXG1 M04840_2.00	Homo sapiens	HRCGYMAACAH	DTGTTKRCGYD	SELEX Yin et al.(2017) FOXG1_eDBD_Methyl-HT-SELEX	0.758	1.000
foxg1a M01985_2.00	Oryzias latipes	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH6729	0.746	0.908
slp1 M01986_2.00	Drosophila melanogaster	NRTAAACANN	NNTGTTTAYN	PBM Weirauch et al.(2014) pTH6549	0.733	0.737
slp1 M03736_2.00	Drosophila melanogaster	WDYRTAAACAWW	WWTGTTTAYRHW	SELEX Nitta et al.(2015) slp1_1	0.733	0.737
slp1 M03737_2.00	Drosophila melanogaster	RTRTAAACAAAYADH	DHTRTTTGTTTAYAY	SELEX Nitta et al.(2015) slp1_2	0.733	0.737
slp1 M06474_2.00	Drosophila melanogaster	WRBVWAAACAH	DTGTTTWBVYW	B1H Mathelier et al.(2014) MA0458.1	0.733	0.737
slp1 M06195_2.00	Drosophila melanogaster	WRBVWAAACAH	DTGTTTWBVYW	B1H Zhu et al.(2011) slp1_NAR_FBgn0003430	0.733	0.737
slp1 M09669_2.00	Drosophila melanogaster	ATGTMAACAMAVV	BBTKTGTTKACAT	Misc Kulakovskiy et al.(2009) slp1	0.733	0.737
CBG14280 M01974_2.00	Caenorhabditis briggsae	RTAAACAN	NTGTTTAY	PBM Weirauch et al.(2014) pTH6734	0.728	0.750
slp2 M03738_2.00	Drosophila melanogaster	NNTRTTTACAACAHN	NDTGTTGTAAAYANN	SELEX Nitta et al.(2015) slp2_1	0.714	0.908
slp2 M06196_2.00	Drosophila melanogaster	RTAAACAV	BTGTTTAY	B1H Zhu et al.(2011) slp2_SANGER_5_FBgn0004567	0.714	0.908
Foxl1 M00164_2.00	Mus musculus	NNNRTMAAYA	TRTTKAYNNN	PBM Badis et al.(2009) Foxl1_2809	0.697	0.671
FOXL1 M03034_2.00	Homo sapiens	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) FOXL1_1	0.697	0.671
FOXL1 M03035_2.00	Homo sapiens	NRTAAAYAAAYAN	NTRTTTRTTTAYN	SELEX Jolma et al.(2013) FOXL1_2	0.697	0.671
FOXL1 M10558_2.00	Homo sapiens	DHNVHATAAAYAHNNN	NNNDTRTTTATDBNDH	Transfac Matys et al.(2006) V$FREAC7_01	0.697	0.671
FOXE1 M04845_2.00	Homo sapiens	BVYTAWRYAAACADN	NHTGTTTRYWTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_HT-SELEX	0.696	0.618
FOXE1 M04846_2.00	Homo sapiens	BVYTAARYAAACAWH	DWTGTTTRYTTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_Methyl-HT-SELEX	0.696	0.618
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.690	0.711
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.690	0.711
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.690	0.711
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.690	0.711
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.690	0.711
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.690	0.711
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.690	0.711
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.690	0.711
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.690	0.711
foxe3 M01228_2.00	Xenopus tropicalis	WNNVHHMAYW	WRTKDDBNNW	PBM Lambert et al.(2019) pTH9824	0.683	0.658
FOXI1 M03026_2.00	Homo sapiens	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) FOXI1_1	0.678	0.632
FOXI1 M03027_2.00	Homo sapiens	RTGTKTACGGTAAACAA	TTGTTTACCGTAMACAY	SELEX Jolma et al.(2013) FOXI1_2	0.678	0.632
FOXI1 M04827_2.00	Homo sapiens	NNNNNRTMAACAN	NTGTTKAYNNNNN	SELEX Yin et al.(2017) FOXI1_eDBD_HT-SELEX	0.678	0.632
FOXI1 M04829_2.00	Homo sapiens	AAYGTAAACAMW	WKTGTTTACRTT	SELEX Yin et al.(2017) FOXI1_FL_HT-SELEX	0.678	0.632
FOXI1 M09095_2.00	Homo sapiens	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_HUMAN.H11MO.0.B	0.678	0.632
FOXI1 M10556_2.00	Homo sapiens	HAWAYAAAYAHVH	DBDTRTTTRTWTD	Transfac Matys et al.(2006) V$HFH3_01	0.678	0.632
FOXI1 M04828_2.00	Homo sapiens	NWWVHRTAAACAH	DTGTTTAYDBWWN	SELEX Yin et al.(2017) FOXI1_eDBD_Methyl-HT-SELEX	0.678	0.632
FOXI1 M04830_2.00	Homo sapiens	AAYRTAAACAAW	WTTGTTTAYRTT	SELEX Yin et al.(2017) FOXI1_FL_Methyl-HT-SELEX	0.678	0.632
Foxi1 M09109_2.00	Mus musculus	RRCCAATCAVAD	HTBTGATTGGYY	Misc Kulakovskiy et al.(2013) FOXI1_MOUSE.H11MO.0.B	0.678	0.618
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.668	0.697
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.665	0.684
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.665	0.684
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.665	0.684
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.665	0.684
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.665	0.684
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.665	0.684
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.665	0.684
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.665	0.684
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.665	0.684
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.665	0.684
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.665	0.684
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.665	0.684
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.665	0.684
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.665	0.671
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.665	0.671
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.665	0.671
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cmyd_10017566	Forkhead	1	79	MMAIRQSPEKRLTLNGIYEFIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGT

Links
Other Forkhead family TFs
Other *Chelonia mydas* TFs

621 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AALB003225	Anopheles albimanus	AALB003225	N
Aan_R003738	Calypte anna	Aan_R003738	N
AARA006109	Anopheles arabiensis	AARA006109	N
AATE009040	Anopheles atroparvus	AATE009040	N
ACEP21606	Atta cephalotes	ACEP21606	N
ACHR007377	Anopheles christyi	ACHR007377	N
ACOM038290	Anopheles coluzzii	ACOM038290	N
ACUA025224	Anopheles culicifacies	ACUA025224	N
ADAC004659	Anopheles darlingi	ADAC004659	N
ADIR009258	Anopheles dirus	ADIR009258	N
AEPI000432	Anopheles epiroticus	AEPI000432	N
AFAF009884	Anopheles farauti	AFAF009884	N
Afo_R005441	Aptenodytes forsteri	Afo_R005441	N
AFUN008496	Anopheles funestus	AFUN008496	N
AGAP004854	Anopheles gambiae	AGAP004854	N
AMAM014474	Anopheles maculatus	AMAM014474	N
AMEC004492	Anopheles melas	AMEC004492	N
AMEM014063	Anopheles merus	AMEM014063	N
AMIN011637	Anopheles minimus	AMIN011637	N
Aqu1.222503	Amphimedon queenslandica	Aqu1.222503	N
AQUA000338	Anopheles quadriannulatus	AQUA000338	N
ASTEI05939	Anopheles stephensi	ASTEI05939	N
BGIBMGA004558	Bombyx mori	BGIBMGA004558	N
Brh_R004837	Buceros rhinoceros	Brh_R004837	N
CapteG147496	Capitella teleta	CapteG147496	N
Cflo_12071--XP_001122635.1_APIME	Camponotus floridanus	Cflo_12071--XP_001122635.1_APIME	N
CGI_10007771	Crassostrea gigas	CGI_10007771	N
CLEC002198	Cimex lectularius	CLEC002198	N
CLEC007177	Cimex lectularius	CLEC007177	N
Cmyd_10020716	Chelonia mydas	Cmyd_10020716	N
DAPPUDRAFT_301194	Daphnia pulex	DAPPUDRAFT_301194	N
ENSAMEG00000012088	Ailuropoda melanoleuca	ENSAMEG00000012088	N
ENSAMXG00000018648	Astyanax mexicanus	ENSAMXG00000018648	N
ENSAMXG00000024732	Astyanax mexicanus	ENSAMXG00000024732	N
ENSAPLG00000007715	Anas platyrhynchos	ENSAPLG00000007715	N
ENSCSAG00000014155	Chlorocebus sabaeus	ENSCSAG00000014155	N
ENSFALG00000002622	Ficedula albicollis	ENSFALG00000002622	N
ENSGALG00000000427	Gallus gallus	ENSGALG00000000427	N
ENSGMOG00000001476	Gadus morhua	ENSGMOG00000001476	N
ENSGMOG00000019538	Gadus morhua	ENSGMOG00000019538	N
ENSGMOG00000019547	Gadus morhua	ENSGMOG00000019547	N
ENSLACG00000012136	Latimeria chalumnae	ENSLACG00000012136	N
ENSLOCG00000010123	Lepisosteus oculatus	ENSLOCG00000010123	N
ENSMEUG00000014994	Macropus eugenii	ENSMEUG00000014994	N
ENSMLUG00000015035	Myotis lucifugus	ENSMLUG00000015035	N
ENSMLUG00000024285	Myotis lucifugus	ENSMLUG00000024285	N
ENSMPUG00000011183	Mustela putorius furo	ENSMPUG00000011183	N
ENSNLEG00000018101	Nomascus leucogenys	ENSNLEG00000018101	N
ENSOARG00000018421	Ovis aries	ENSOARG00000018421	N
ENSONIG00000016770	Oreochromis niloticus	ENSONIG00000016770	N
ENSONIG00000019223	Oreochromis niloticus	ENSONIG00000019223	N
ENSP00000356233	Macaca fascicularis	ENSP00000356233	N
ENSP00000356233-D1	Bos grunniens	ENSP00000356233-D1	N
ENSPANG00000014633	Papio anubis	ENSPANG00000014633	N
ENSPFOG00000006840	Poecilia formosa	ENSPFOG00000006840	N
ENSPFOG00000015221	Poecilia formosa	ENSPFOG00000015221	N
ENSPMAG00000003030	Petromyzon marinus	ENSPMAG00000003030	N
ENSPPYG00000000346	Pongo abelii	ENSPPYG00000000346	N
ENSPTRG00000021925	Pan troglodytes	ENSPTRG00000021925	N
ENSSHAG00000000588	Sarcophilus harrisii	ENSSHAG00000000588	N
ENSSHAG00000015215	Sarcophilus harrisii	ENSSHAG00000015215	N
ENSSTOG00000000372	Ictidomys tridecemlineatus	ENSSTOG00000000372	N
ENSXMAG00000003378	Xiphophorus maculatus	ENSXMAG00000003378	N
ENSXMAG00000011463	Xiphophorus maculatus	ENSXMAG00000011463	N
GB52426	Apis mellifera	GB52426	N
HMEL015554	Heliconius melpomene	HMEL015554	N
KDM5B	Anolis carolinensis	ENSACAG00000005107	N
KDM5B	Bos taurus	ENSBTAG00000006175	N
KDM5B	Canis familiaris	ENSCAFG00000010452	N
KDM5B	Choloepus hoffmanni	ENSCHOG00000012197	N
KDM5B	Callithrix jacchus	ENSCJAG00000006050	N
KDM5B	Cavia porcellus	ENSCPOG00000010644	N
KDM5B	Dasypus novemcinctus	ENSDNOG00000003205	N
KDM5B	Equus caballus	ENSECAG00000014268	N
KDM5B	Echinops telfairi	ENSETEG00000018113	N
KDM5B	Felis catus	ENSFCAG00000013102	N
KDM5B	Homo sapiens	ENSG00000117139	N
KDM5B	Gorilla gorilla	ENSGGOG00000003073	N
KDM5B	Loxodonta africana	ENSLAFG00000005104	N
KDM5B	Meleagris gallopavo	ENSMGAG00000001393	N
KDM5B	Microcebus murinus	ENSMICG00000006046	N
KDM5B	Macaca mulatta	ENSMMUG00000015233	N
KDM5B	Monodelphis domestica	ENSMODG00000000755	N
Kdm5b	Mus musculus	ENSMUSG00000042207	N
KDM5B	Ornithorhynchus anatinus	ENSOANG00000002512	N
KDM5B	Oryctolagus cuniculus	ENSOCUG00000008003	N
KDM5B	Pan troglodytes	ENSPTRG00000001856	N
KDM5B	Pteropus vampyrus	ENSPVAG00000011030	N
Kdm5b	Rattus norvegicus	ENSRNOG00000060544	N
KDM5B	Sorex araneus	ENSSARG00000012265	N
KDM5B	Sus scrofa	ENSSSCG00000010928	N
KDM5B	Tupaia belangeri	ENSTBEG00000006521	N
KDM5B	Taeniopygia guttata	ENSTGUG00000001257	N
KDM5B	Tursiops truncatus	ENSTTRG00000001078	N
KDM5B	Vicugna pacos	ENSVPAG00000006056	N
kdm5b	Xenopus tropicalis	XB-GENE-856240	N
kdm5ba	Danio rerio	ENSDARG00000057093	N
kdm5ba	Gasterosteus aculeatus	ENSGACG00000000508	N
kdm5ba	Oryzias latipes	ENSORLG00000014767	N
kdm5ba	Tetraodon nigroviridis	ENSTNIG00000007074	N
kdm5ba	Takifugu rubripes	ENSTRUG00000013308	N
kdm5bb	Danio rerio	ENSDARG00000003098	N
kdm5bb	Gasterosteus aculeatus	ENSGACG00000011868	N
kdm5bb	Oryzias latipes	ENSORLG00000014990	N
Kdm5c	Rattus norvegicus	ENSRNOG00000057706	N
KDM5C	Sorex araneus	ENSSARG00000000542	N
Kdm5d	Mus musculus	ENSMUSG00000056673	N
KGM_20601	Danaus plexippus	KGM_20601	N
LDEC003750	Leptinotarsa decemlineata	LDEC003750	N
LLOJ009523	Lutzomyia longipalpis	LLOJ009523	N
LotgiG205701	Lottia gigantea	LotgiG205701	N
MCINX012993	Melitaea cinxia	MCINX012993	N
Myotis_brandtii_KDM5B_10008160	Myotis brandtii	Myotis_brandtii_KDM5B_10008160	N
Myotis_brandtii_KDM5B_10012819	Myotis brandtii	Myotis_brandtii_KDM5B_10012819	N
NV16665	Nasonia vitripennis	NV16665	N
Ogr08783	Ophisaurus gracilis	Ogr08783	N
RPRC012847	Rhodnius prolixus	RPRC012847	N
Sakowv30029063m.g	Saccoglossus kowalevskii	Sakowv30029063m.g	N
SMAR004279	Strigamia maritima	SMAR004279	N
Tal_R003404	Tyto alba	Tal_R003404	N
tetur02g05990	Tetranychus urticae	tetur02g05990	N

Cmyd_10017566 (Chelonia mydas) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

621 Related TFs

Cmyd_10017566 **(Chelonia mydas)
Forkhead**