CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.4.1133.1
(
Mucor circinelloides
)
Forkhead
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00250 (Forkhead)
IPR001766
gw1.4.1133.1
T189353_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Foxj3
M00160_2.00
Mus musculus
NRTAAACAHN
NDTGTTTAYN
PBM
Badis et al.(2009)
Foxj3_0982
0.743
0.692
Foxj3
M01981_2.00
Mus musculus
VNHHAYANN
NNTRTDDNB
PBM
Weirauch et al.(2014)
pTH6591
0.743
0.692
FOXJ3
M03046_2.00
Homo sapiens
RTAAAVAA
TTBTTTAY
SELEX
Jolma et al.(2013)
FOXJ3_1
0.743
0.692
FOXJ3
M03047_2.00
Homo sapiens
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ3_2
0.743
0.692
FOXJ3
M03048_2.00
Homo sapiens
GTAAACATAAACA
TGTTTATGTTTAC
SELEX
Jolma et al.(2013)
FOXJ3_3
0.743
0.692
Foxj3
M03055_2.00
Mus musculus
ACGGACACAAT
ATTGTGTCCGT
SELEX
Jolma et al.(2013)
Foxj3_1
0.743
0.692
Foxj3
M03056_2.00
Mus musculus
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
Foxj3_2
0.743
0.692
Foxj3
M03057_2.00
Mus musculus
RTAAACAW
WTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_3
0.743
0.692
Foxj3
M03058_2.00
Mus musculus
RTAAACAWAAACA
TGTTTWTGTTTAY
SELEX
Jolma et al.(2013)
Foxj3_4
0.743
0.692
FOXJ3
M02736_2.00
Homo sapiens
AAACAATAAACA
TGTTTATTGTTT
SELEX
Jolma et al.(2010)
FOXJ3_dimer
0.743
0.692
FOXJ3
M02737_2.00
Homo sapiens
RTAAACAW
WTGTTTAY
SELEX
Jolma et al.(2010)
FOXJ3_monomer
0.743
0.692
FOXJ3
M04859_2.00
Homo sapiens
DYGTMAACAH
DTGTTKACRH
SELEX
Yin et al.(2017)
FOXJ3_eDBD_HT-SELEX
0.743
0.692
FOXJ3
M09098_2.00
Homo sapiens
WAAMMATAAACAN
NTGTTTATKKTTW
Misc
Kulakovskiy et al.(2013)
FOXJ3_HUMAN.H11MO.0.A
0.743
0.692
Foxj3
M09102_2.00
Mus musculus
WAAMMATAAACAN
NTGTTTATKKTTW
Misc
Kulakovskiy et al.(2013)
FOXJ3_MOUSE.H11MO.0.A
0.743
0.692
FOXJ3
M04860_2.00
Homo sapiens
RYGTMAACAH
DTGTTKACRY
SELEX
Yin et al.(2017)
FOXJ3_eDBD_Methyl-HT-SELEX
0.743
0.692
SPU_007644
M01987_2.00
Strongylocentrotus purpuratus
NNHHAYDNN
NNHRTDDNN
PBM
Weirauch et al.(2014)
pTH6497
0.739
0.679
Foxj2
M00790_2.00
Mus musculus
VHMAAYANN
NNTRTTKDB
PBM
Weirauch et al.(2013)
pTH3043
0.734
0.705
Foxj2
M01980_2.00
Mus musculus
RTAAACAN
NTGTTTAY
PBM
Weirauch et al.(2014)
pTH6638
0.734
0.705
FOXJ2
M03016_2.00
Homo sapiens
GTAAACARTMAACA
TGTTKAYTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ2_1
0.734
0.705
FOXJ2
M03017_2.00
Homo sapiens
RTAAACAH
DTGTTTAY
SELEX
Jolma et al.(2013)
FOXJ2_2
0.734
0.705
FOXJ2
M03018_2.00
Homo sapiens
GTAAACAWMAACA
TGTTKWTGTTTAC
SELEX
Jolma et al.(2013)
FOXJ2_3
0.734
0.705
FOXJ2
M04809_2.00
Homo sapiens
NTRTTTACAAYANN
NNTRTTGTAAAYAN
SELEX
Yin et al.(2017)
FOXJ2_eDBD_HT-SELEX
0.734
0.705
FOXJ2
M09084_2.00
Homo sapiens
WARAYAAAYA
TRTTTRTYTW
Misc
Kulakovskiy et al.(2013)
FOXJ2_HUMAN.H11MO.0.C
0.734
0.705
Foxj2
M09100_2.00
Mus musculus
WARAYAAAYA
TRTTTRTYTW
Misc
Kulakovskiy et al.(2013)
FOXJ2_MOUSE.H11MO.0.C
0.734
0.705
FOXJ2
M10527_2.00
Homo sapiens
HHNHMRAYAAAYANHNND
HNNDNTRTTTRTYKDNDD
Transfac
Matys et al.(2006)
V$FOXJ2_01
0.734
0.705
FOXJ2
M10528_2.00
Homo sapiens
VYMAYAATATTTKN
NMAAATATTRTKRB
Transfac
Matys et al.(2006)
V$FOXJ2_02
0.734
0.705
FOXJ2
M04810_2.00
Homo sapiens
NTRTTTACAAYANN
NNTRTTGTAAAYAN
SELEX
Yin et al.(2017)
FOXJ2_eDBD_Methyl-HT-SELEX
0.734
0.705
HCM1
M00044_2.00
Saccharomyces cerevisiae
NRWHAACAN
NTGTTDWYN
PBM
Badis et al.(2008)
HCM1_2157
0.682
0.551
HCM1
M07473_2.00
Saccharomyces cerevisiae
VWMAACAH
DTGTTKWB
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0317.1
0.682
0.551
HCM1
M08554_2.00
Saccharomyces cerevisiae
VWMAACAH
DTGTTKWB
Misc
DeBoer et al.(2011)
YCR065W_570
0.682
0.551
SPU_025010
M01988_2.00
Strongylocentrotus purpuratus
NNVNHHAYAN
NTRTDDNBNN
PBM
Weirauch et al.(2014)
pTH6641
0.677
0.628
Foxk1
M00163_2.00
Mus musculus
RWMAACAA
TTGTTKWY
PBM
Badis et al.(2009)
Foxk1_2323
0.670
0.628
Foxk1
M03061_2.00
Mus musculus
CGGACACAATC
GATTGTGTCCG
SELEX
Jolma et al.(2013)
Foxk1_1
0.670
0.628
Foxk1
M03062_2.00
Mus musculus
RTAAACA
TGTTTAY
SELEX
Jolma et al.(2013)
Foxk1_2
0.670
0.628
Foxk1
M09113_2.00
Mus musculus
NNGDMAACAVV
BBTGTTKHCNN
Misc
Kulakovskiy et al.(2013)
FOXK1_MOUSE.H11MO.0.A
0.670
0.628
FOXK1
M01977_2.00
Homo sapiens
NNRWMMAYAN
NTRTKKWYNN
PBM
Weirauch et al.(2014)
pTH6108
0.670
0.615
FOXK1
M03025_2.00
Homo sapiens
CGGACACAAT
ATTGTGTCCG
SELEX
Jolma et al.(2013)
FOXK1_1
0.670
0.615
FOXK1
M04825_2.00
Homo sapiens
NDNRTMAAYAN
NTRTTKAYNHN
SELEX
Yin et al.(2017)
FOXK1_eDBD_HT-SELEX
0.670
0.615
FOXK1
M08120_2.00
Homo sapiens
NNNGTAAACANVNN
NNBNTGTTTACNNN
ChIP-seq
Mathelier et al.(2014)
MA0852.2
0.670
0.615
FOXK1
M09094_2.00
Homo sapiens
VNDRDAAACA
TGTTTHYHNB
Misc
Kulakovskiy et al.(2013)
FOXK1_HUMAN.H11MO.0.A
0.670
0.615
FOXK1
M04826_2.00
Homo sapiens
NWYRYAAWYAD
HTRWTTRYRWN
SELEX
Yin et al.(2017)
FOXK1_eDBD_Methyl-HT-SELEX
0.670
0.615
For this family, TFs with SR scores >
0.664
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.4.1133.1
Forkhead
1
78
KPPYSYATLIKYAIENSQRKKLTLSEIYQWVIDHYPYYGTAGTGWKNSIRHNLSLNKSFVRVPRPINEPGKGSYWQVD
Links
Other
Forkhead
family TFs
Other
Mucor circinelloides
TFs
351 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIBMGA003558
Bombyx mori
BGIBMGA003558
I
Cmyd_10001799
Chelonia mydas
Cmyd_10001799
I
csin108884
Clonorchis sinensis
csin108884
I
DAPPUDRAFT_290631
Daphnia pulex
DAPPUDRAFT_290631
I
dmd-5
Caenorhabditis elegans
WBGene00017326
D
dmrt2b
Danio rerio
ENSDARG00000070013
I
DMRT3
Bos taurus
ENSBTAG00000017800
I
DMRT3
Canis familiaris
ENSCAFG00000023150
I
DMRT3
Callithrix jacchus
ENSCJAG00000010681
I
DMRT3
Cavia porcellus
ENSCPOG00000005912
I
DMRT3
Dasypus novemcinctus
ENSDNOG00000004047
I
DMRT3
Homo sapiens
ENSG00000064218
D
DMRT3
Gallus gallus
ENSGALG00000010161
I
DMRT3
Gorilla gorilla
ENSGGOG00000013303
I
DMRT3
Monodelphis domestica
ENSMODG00000003407
I
Dmrt3
Mus musculus
ENSMUSG00000042372
I
DMRT3
Ornithorhynchus anatinus
ENSOANG00000008295
I
DMRT3
Oryctolagus cuniculus
ENSOCUG00000003295
I
DMRT3
Otolemur garnettii
ENSOGAG00000026565
I
DMRT3
Ochotona princeps
ENSOPRG00000011113
I
DMRT3
Pan troglodytes
ENSPTRG00000020729
I
Dmrt3
Rattus norvegicus
ENSRNOG00000016284
I
DMRT3
Tupaia belangeri
ENSTBEG00000002058
I
DMRT3
Taeniopygia guttata
ENSTGUG00000005521
I
dmrt3
Takifugu rubripes
ENSTRUG00000015692
I
dmrt3a
Danio rerio
ENSDARG00000035290
I
dmrt3a
Gasterosteus aculeatus
ENSGACG00000014511
I
dmrt3a
Tetraodon nigroviridis
ENSTNIG00000015641
I
dmrt93B
Drosophila melanogaster
FBgn0038851
D
DMRTC2
Callithrix jacchus
ENSCJAG00000020238
I
DMRTC2
Cavia porcellus
ENSCPOG00000001805
D
Dmrtc2
Dipodomys ordii
ENSDORG00000010810
I
DMRTC2
Homo sapiens
ENSG00000142025
D
DMRTC2
Gorilla gorilla
ENSGGOG00000015274
I
DMRTC2
Macaca mulatta
ENSMMUG00000013426
I
Dmrtc2
Mus musculus
ENSMUSG00000011349
D
DMRTC2
Otolemur garnettii
ENSOGAG00000011998
I
DMRTC2
Pan troglodytes
ENSPTRG00000011036
I
Dmrtc2
Rattus norvegicus
ENSRNOG00000046142
I
ENSACAG00000002401
Anolis carolinensis
ENSACAG00000002401
I
ENSAMEG00000004439
Ailuropoda melanoleuca
ENSAMEG00000004439
I
ENSAMEG00000017464
Ailuropoda melanoleuca
ENSAMEG00000017464
I
ENSAMXG00000011403
Astyanax mexicanus
ENSAMXG00000011403
I
ENSAMXG00000012495
Astyanax mexicanus
ENSAMXG00000012495
I
ENSBTAG00000019273
Bos taurus
ENSBTAG00000019273
I
ENSBTAP00000025660-D1
Bos grunniens
ENSBTAP00000025660-D1
I
ENSCAFG00000004988
Canis familiaris
ENSCAFG00000004988
I
ENSCSAG00000003507
Chlorocebus sabaeus
ENSCSAG00000003507
I
ENSCSAG00000008627
Chlorocebus sabaeus
ENSCSAG00000008627
I
ENSDNOG00000045333
Dasypus novemcinctus
ENSDNOG00000045333
I
ENSDORG00000006366
Dipodomys ordii
ENSDORG00000006366
I
ENSFALG00000010391
Ficedula albicollis
ENSFALG00000010391
I
ENSFCAG00000008126
Felis catus
ENSFCAG00000008126
I
ENSGMOG00000014320
Gadus morhua
ENSGMOG00000014320
I
ENSLACG00000012023
Latimeria chalumnae
ENSLACG00000012023
I
ENSLAFG00000026131
Loxodonta africana
ENSLAFG00000026131
I
ENSLOCG00000011480
Lepisosteus oculatus
ENSLOCG00000011480
I
ENSMICG00000004546
Microcebus murinus
ENSMICG00000004546
I
ENSMICG00000010423
Microcebus murinus
ENSMICG00000010423
I
ENSMLUG00000026555
Myotis lucifugus
ENSMLUG00000026555
I
ENSMMUG00000017848
Macaca mulatta
ENSMMUG00000017848
I
ENSMODG00000010059
Monodelphis domestica
ENSMODG00000010059
D
ENSMPUG00000007147
Mustela putorius furo
ENSMPUG00000007147
I
ENSNLEG00000008556
Nomascus leucogenys
ENSNLEG00000008556
I
ENSNLEG00000013548
Nomascus leucogenys
ENSNLEG00000013548
I
ENSOANG00000013938
Ornithorhynchus anatinus
ENSOANG00000013938
D
ENSOARG00000008393
Ovis aries
ENSOARG00000008393
I
ENSONIG00000014199
Oreochromis niloticus
ENSONIG00000014199
I
ENSP00000391032
Macaca fascicularis
ENSP00000391032
I
ENSPANG00000015477
Papio anubis
ENSPANG00000015477
I
ENSPCAG00000016520
Procavia capensis
ENSPCAG00000016520
I
ENSPFOG00000001398
Poecilia formosa
ENSPFOG00000001398
I
ENSPPYG00000010028
Pongo abelii
ENSPPYG00000010028
I
ENSPVAG00000008978
Pteropus vampyrus
ENSPVAG00000008978
I
ENSSSCG00000003043
Sus scrofa
ENSSSCG00000003043
I
ENSSTOG00000003484
Ictidomys tridecemlineatus
ENSSTOG00000003484
I
ENSSTOG00000023574
Ictidomys tridecemlineatus
ENSSTOG00000023574
I
ENSTBEG00000003428
Tupaia belangeri
ENSTBEG00000003428
I
ENSVPAG00000003197
Vicugna pacos
ENSVPAG00000003197
I
ENSXMAG00000015600
Xiphophorus maculatus
ENSXMAG00000015600
I
fgenesh2_pg.scaffold_219000044
Branchiostoma floridae
fgenesh2_pg.scaffold_219000044
I
fgenesh2_pg.scaffold_219000049
Branchiostoma floridae
fgenesh2_pg.scaffold_219000049
I
GA19095
Drosophila pseudoobscura
FBgn0079093
I
GD19394
Drosophila simulans
FBgn0190895
I
GF16494
Drosophila ananassae
FBgn0093515
I
GG24332
Drosophila erecta
FBgn0116464
I
GH18276
Drosophila grimshawi
FBgn0125744
I
GI24085
Drosophila mojavensis
FBgn0146808
I
GJ10903
Drosophila virilis
FBgn0198171
I
GK14181
Drosophila willistoni
FBgn0216187
I
GL11942
Drosophila persimilis
FBgn0149550
I
GM15062
Drosophila sechellia
FBgn0169982
I
HMEL014130
Heliconius melpomene
HMEL014130
I
KGM_19995
Danaus plexippus
KGM_19995
I
LOC100910371
Rattus norvegicus
ENSRNOG00000020109
I
MCINX010346
Melitaea cinxia
MCINX010346
I
ML087212a
Mnemiopsis leidyi
ML087212a
I
Myotis_brandtii_DMRTC2_10007110
Myotis brandtii
Myotis_brandtii_DMRTC2_10007110
I
Myotis_brandtii_DMRTC2_10025389
Myotis brandtii
Myotis_brandtii_DMRTC2_10025389
I
Ogr10274
Ophisaurus gracilis
Ogr10274
I
Pvit_02878
Pogona vitticeps
Pvit_02878
I
Sakowv30017450m.g
Saccoglossus kowalevskii
Sakowv30017450m.g
I
T265_13501
Opisthorchis viverrini
T265_13501
I
XP_002941052
Xenopus tropicalis
XP_002941052
I