CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Carubv10009866m.g *(Capsella rubella)* GATA
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00320 (GATA)	IPR000679	Carubv10009866m.g	T196454_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
GATA24 M01941_2.00	Arabidopsis thaliana	HGATBNN	NNVATCD	PBM Weirauch et al.(2014) pTH7661	0.851	0.917
GATA28 M01996_2.00	Arabidopsis thaliana	NNGATNN	NNATCNN	PBM Weirauch et al.(2014) pTH7505	0.851	0.917
GATA28 M06883_2.00	Arabidopsis thaliana	GATGATGATGATGATGATG	CATCATCATCATCATCATC	Dap-seq OMalley et al.(2016) ZML2_col_a	0.851	0.917
OS06G0698900 M02015_2.00	Oryza sativa	NNNNAHBNN	NNVDTNNNN	PBM Weirauch et al.(2014) pTH8641	0.851	0.861
ZIM M06892_2.00	Arabidopsis thaliana	AWYSRACGGYYVWGA	TCWBRRCCGTYSRWT	Dap-seq OMalley et al.(2016) ZIM_col_a	0.815	0.833
For this family, TFs with SR scores > 0.802* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Carubv10009866m	GATA	223	260	CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKGAL

Links
Other GATA family TFs
Other *Capsella rubella* TFs