Carubv10009866m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10009866m.g T196454_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.851 0.917
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.851 0.917
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.851 0.917
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.851 0.861
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.815 0.833
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009866m GATA 223 260

Links

Other GATA family TFs
Other Capsella rubella TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.867
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.867
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.867
TCM_027858 Theobroma cacao TCM_027858 I 0.867
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.867
Ca_17522 Cicer arietinum Ca_17522 I 0.867
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.867
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.867
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.867
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.867
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.867
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.867
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.865
Bo1g108240 Brassica oleracea Bo1g108240 I 0.862
Bo3g181450 Brassica oleracea Bo3g181450 I 0.862
Bo5g103560 Brassica oleracea Bo5g103560 I 0.862
Bra023900 Brassica rapa Bra023900 I 0.862
Bra031258 Brassica rapa Bra031258 I 0.862
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.862
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.862
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.862
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.862
Bra014292 Brassica rapa Bra014292 I 0.861
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.857
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.857
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.857
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.857
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.856
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.856
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.856
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.856
OB06G33840 Oryza brachyantha OB06G33840 I 0.856
OBART02G03780 Oryza barthii OBART02G03780 I 0.856
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.856
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.856
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.856
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.856
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.856
GATA17 Oryza sativa OS02G0148500 I 0.856
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.856
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.856
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.856
Cla015736 Citrullus lanatus Cla015736 I 0.855
GATA24 Arabidopsis thaliana AT3G21175 D 0.851
GATA28 Arabidopsis thaliana AT1G51600 D 0.851
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.851
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.851
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.851
OB02G13220 Oryza brachyantha OB02G13220 I 0.851
OBART06G26250 Oryza barthii OBART06G26250 I 0.851
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.851
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.851
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.851
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.851
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.851
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.851
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.851
OS06G0698900 Oryza sativa OS06G0698900 D 0.851
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.851
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.851
Si006750m.g Setaria italica Si006750m.g I 0.851
Pm013048 Prunus mume Pm013048 I 0.851
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.851
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.851
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.851
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.851
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.851
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.851
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.851
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.850
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.850
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.847
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.847
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.847
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.847
F775_08559 Aegilops tauschii F775_08559 I 0.842
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.842
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.842
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.842
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.842
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.842
TCM_007360 Theobroma cacao TCM_007360 I 0.842
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.842
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.842
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.842
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.842
Pm022163 Prunus mume Pm022163 I 0.842
29838.m001724 Ricinus communis 29838.m001724 I 0.842
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.842
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.842
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.842
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.840
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.837
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.837
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.837
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.837
mgf016112m Mimulus guttatus mgf016112m I 0.837
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.837
Cla013127 Citrullus lanatus Cla013127 I 0.836
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.835
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.834
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.831
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.823
ZIM Arabidopsis thaliana AT4G24470 D 0.815
Bo1g039000 Brassica oleracea Bo1g039000 I 0.815
Bra013805 Brassica rapa Bra013805 I 0.815
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.815
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.815
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.815
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.815
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.815
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.815
Ca_01471 Cicer arietinum Ca_01471 I 0.810
PK11000.1 Cannabis sativa PK11000.1 I 0.806