Sb10g028750 (Sorghum bicolor)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Sb10g028750 T195116_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.862 0.944
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.862 0.889
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.847 0.806
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.847 0.806
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.806 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Sb10g028750.1 GATA 262 299
Sb10g028750.2 GATA 262 299

Links

Other GATA family TFs
Other Sorghum bicolor TFs

115 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.867
GATA24 Arabidopsis thaliana AT3G21175 D 0.862
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.862
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.862
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.862
OBART06G26250 Oryza barthii OBART06G26250 I 0.862
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.862
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.862
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.862
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.862
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.862
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.862
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.862
OS06G0698900 Oryza sativa OS06G0698900 D 0.862
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.862
Si006750m.g Setaria italica Si006750m.g I 0.862
Pm013048 Prunus mume Pm013048 I 0.862
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.862
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.862
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.862
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.861
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.861
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.857
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.857
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.857
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.857
OB02G13220 Oryza brachyantha OB02G13220 I 0.857
OB06G33840 Oryza brachyantha OB06G33840 I 0.857
OBART02G03780 Oryza barthii OBART02G03780 I 0.857
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.857
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.857
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.857
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.857
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.857
GATA17 Oryza sativa OS02G0148500 I 0.857
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.857
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.857
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.856
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.856
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.856
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.856
Cla015736 Citrullus lanatus Cla015736 I 0.856
Bo1g108240 Brassica oleracea Bo1g108240 I 0.851
Bo5g103560 Brassica oleracea Bo5g103560 I 0.851
Bra023900 Brassica rapa Bra023900 I 0.851
Bra031258 Brassica rapa Bra031258 I 0.851
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.851
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.851
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.851
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.851
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.848
GATA28 Arabidopsis thaliana AT1G51600 D 0.847
Bo3g181450 Brassica oleracea Bo3g181450 I 0.847
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.847
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.847
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.847
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.847
TCM_027858 Theobroma cacao TCM_027858 I 0.847
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.847
Ca_17522 Cicer arietinum Ca_17522 I 0.847
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.847
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.847
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.847
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.847
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.847
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.847
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.847
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.847
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.847
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.847
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.847
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.847
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.847
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.847
Bra014292 Brassica rapa Bra014292 I 0.845
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.845
F775_08559 Aegilops tauschii F775_08559 I 0.843
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.843
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.843
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.843
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.843
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.843
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.843
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.843
mgf016112m Mimulus guttatus mgf016112m I 0.843
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.843
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.842
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.837
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.837
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.837
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.837
Cla013127 Citrullus lanatus Cla013127 I 0.836
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.832
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.832
TCM_007360 Theobroma cacao TCM_007360 I 0.832
Pm022163 Prunus mume Pm022163 I 0.832
29838.m001724 Ricinus communis 29838.m001724 I 0.832
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.832
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.832
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.831
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.829
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.823
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.815
Ca_01471 Cicer arietinum Ca_01471 I 0.810
ZIM Arabidopsis thaliana AT4G24470 D 0.806
Bo1g039000 Brassica oleracea Bo1g039000 I 0.806
Bra013805 Brassica rapa Bra013805 I 0.806
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.806
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.806
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.806
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.806
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.806
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.806
PK11000.1 Cannabis sativa PK11000.1 I 0.806