PK11000.1 (Cannabis sativa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 PK11000.1 T196911_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.812 0.750
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.812 0.750
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.811 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK11000.1 GATA 225 262

Links

Other GATA family TFs
Other Cannabis sativa TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.836
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.836
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.836
Cla013127 Citrullus lanatus Cla013127 I 0.835
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.831
Pm022163 Prunus mume Pm022163 I 0.831
29838.m001724 Ricinus communis 29838.m001724 I 0.831
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.831
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.825
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.822
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.820
TCM_007360 Theobroma cacao TCM_007360 I 0.820
mgf016112m Mimulus guttatus mgf016112m I 0.820
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.820
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.817
GATA28 Arabidopsis thaliana AT1G51600 D 0.812
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.812
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.812
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.812
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.812
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.812
GATA24 Arabidopsis thaliana AT3G21175 D 0.811
Bo1g108240 Brassica oleracea Bo1g108240 I 0.811
Bo5g103560 Brassica oleracea Bo5g103560 I 0.811
Bra023900 Brassica rapa Bra023900 I 0.811
Bra031258 Brassica rapa Bra031258 I 0.811
Si006750m.g Setaria italica Si006750m.g I 0.811
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.811
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.811
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.811
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.811
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.811
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.806
F775_08559 Aegilops tauschii F775_08559 I 0.806
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.806
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.806
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.806
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.806
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.806
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.806
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.806
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.806
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.806
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.806
OB06G33840 Oryza brachyantha OB06G33840 I 0.806
OBART02G03780 Oryza barthii OBART02G03780 I 0.806
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.806
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.806
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.806
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.806
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.806
GATA17 Oryza sativa OS02G0148500 I 0.806
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.806
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.806
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.806
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.806
TCM_027858 Theobroma cacao TCM_027858 I 0.806
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.806
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.806
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.806
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.806
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.806
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.806
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.806
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.806
Ca_17522 Cicer arietinum Ca_17522 I 0.806
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.806
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.806
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.806
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.806
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.806
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.806
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.806
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.806
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.806
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.806
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.805
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.805
Cla015736 Citrullus lanatus Cla015736 I 0.805
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.805