Carubv10016131m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10016131m.g T196460_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.856 0.972
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.847 0.861
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.847 0.861
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.847 0.833
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.810 0.833
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10016131m GATA 219 256

Links

Other GATA family TFs
Other Capsella rubella TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g108240 Brassica oleracea Bo1g108240 I 0.867
Bo5g103560 Brassica oleracea Bo5g103560 I 0.867
Bra023900 Brassica rapa Bra023900 I 0.867
Bra031258 Brassica rapa Bra031258 I 0.867
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.867
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.862
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.862
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.862
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.862
TCM_027858 Theobroma cacao TCM_027858 I 0.862
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.862
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.862
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.862
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.862
Ca_17522 Cicer arietinum Ca_17522 I 0.862
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.862
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.862
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.862
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.862
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.862
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.862
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.862
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.861
Bo3g181450 Brassica oleracea Bo3g181450 I 0.857
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.857
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.857
GATA24 Arabidopsis thaliana AT3G21175 D 0.856
Bra014292 Brassica rapa Bra014292 I 0.856
Si006750m.g Setaria italica Si006750m.g I 0.856
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.856
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.856
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.856
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.851
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.851
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.851
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.851
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.851
OB06G33840 Oryza brachyantha OB06G33840 I 0.851
OBART02G03780 Oryza barthii OBART02G03780 I 0.851
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.851
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.851
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.851
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.851
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.851
GATA17 Oryza sativa OS02G0148500 I 0.851
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.851
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.851
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.851
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.851
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.851
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.851
Cla015736 Citrullus lanatus Cla015736 I 0.850
GATA28 Arabidopsis thaliana AT1G51600 D 0.847
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.847
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.847
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.847
OB02G13220 Oryza brachyantha OB02G13220 I 0.847
OBART06G26250 Oryza barthii OBART06G26250 I 0.847
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.847
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.847
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.847
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.847
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.847
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.847
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.847
OS06G0698900 Oryza sativa OS06G0698900 D 0.847
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.847
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.847
Pm013048 Prunus mume Pm013048 I 0.847
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.847
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.847
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.847
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.847
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.845
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.845
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.842
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.842
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.842
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.842
Cla013127 Citrullus lanatus Cla013127 I 0.840
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.839
F775_08559 Aegilops tauschii F775_08559 I 0.837
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.837
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.837
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.837
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.837
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.837
TCM_007360 Theobroma cacao TCM_007360 I 0.837
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.837
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.837
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.837
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.837
Pm022163 Prunus mume Pm022163 I 0.837
29838.m001724 Ricinus communis 29838.m001724 I 0.837
mgf016112m Mimulus guttatus mgf016112m I 0.837
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.837
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.837
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.837
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.836
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.832
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.831
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.830
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.823
Ca_01471 Cicer arietinum Ca_01471 I 0.815
PK11000.1 Cannabis sativa PK11000.1 I 0.811
ZIM Arabidopsis thaliana AT4G24470 D 0.810
Bo1g039000 Brassica oleracea Bo1g039000 I 0.810
Bra013805 Brassica rapa Bra013805 I 0.810
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.810
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.810
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.810
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.810
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.810
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.810