Carubv10006355m.g (Capsella rubella)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Carubv10006355m.g T196451_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.867 1.000
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.810 0.833
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.810 0.806
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.810 0.778
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.810 0.778
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006355m GATA 217 254

Links

Other GATA family TFs
Other Capsella rubella TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ZIM Arabidopsis thaliana AT4G24470 D 0.867
Bo1g039000 Brassica oleracea Bo1g039000 I 0.867
Bra013805 Brassica rapa Bra013805 I 0.867
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.867
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.867
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.867
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.867
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.867
Ca_01471 Cicer arietinum Ca_01471 I 0.862
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.829
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.826
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.817
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.817
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.815
F775_08559 Aegilops tauschii F775_08559 I 0.815
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.815
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.815
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.815
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.815
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.815
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.815
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.815
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.815
OB06G33840 Oryza brachyantha OB06G33840 I 0.815
OBART02G03780 Oryza barthii OBART02G03780 I 0.815
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.815
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.815
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.815
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.815
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.815
GATA17 Oryza sativa OS02G0148500 I 0.815
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.815
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.815
TCM_007360 Theobroma cacao TCM_007360 I 0.815
TCM_027858 Theobroma cacao TCM_027858 I 0.815
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.815
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.815
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.815
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.815
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.815
Ca_17522 Cicer arietinum Ca_17522 I 0.815
Pm022163 Prunus mume Pm022163 I 0.815
29838.m001724 Ricinus communis 29838.m001724 I 0.815
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.815
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.815
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.815
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.815
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.815
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.815
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.815
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.815
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.815
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.815
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.815
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.815
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.814
Cla015736 Citrullus lanatus Cla015736 I 0.814
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.814
GATA24 Arabidopsis thaliana AT3G21175 D 0.810
GATA28 Arabidopsis thaliana AT1G51600 D 0.810
Bo1g108240 Brassica oleracea Bo1g108240 I 0.810
Bo3g181450 Brassica oleracea Bo3g181450 I 0.810
Bo5g103560 Brassica oleracea Bo5g103560 I 0.810
Bra023900 Brassica rapa Bra023900 I 0.810
Bra031258 Brassica rapa Bra031258 I 0.810
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.810
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.810
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.810
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.810
OB02G13220 Oryza brachyantha OB02G13220 I 0.810
OBART06G26250 Oryza barthii OBART06G26250 I 0.810
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.810
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.810
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.810
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.810
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.810
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.810
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.810
OS06G0698900 Oryza sativa OS06G0698900 D 0.810
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.810
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.810
Si006750m.g Setaria italica Si006750m.g I 0.810
Pm013048 Prunus mume Pm013048 I 0.810
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.810
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.810
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.810
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.810
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.810
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.810
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.810
mgf016112m Mimulus guttatus mgf016112m I 0.810
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.810
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.810
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.810
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.810
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.810
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.810
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.810
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.810
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.809
Bra014292 Brassica rapa Bra014292 I 0.809
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.809
Cla013127 Citrullus lanatus Cla013127 I 0.809
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.809
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.806
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.806
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.806
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.806
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.806
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.806
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.805