Cla013127 (Citrullus lanatus)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Cla013127 T195874_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.842 0.800
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.842 0.800
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.840 0.829
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.831 0.771
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.809 0.829
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla013127 GATA 225 261

Links

Other GATA family TFs
Other Citrullus lanatus TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I 0.865
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.865
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.865
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.861
Pm022163 Prunus mume Pm022163 I 0.861
29838.m001724 Ricinus communis 29838.m001724 I 0.861
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.861
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.856
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.852
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.850
TCM_007360 Theobroma cacao TCM_007360 I 0.850
mgf016112m Mimulus guttatus mgf016112m I 0.850
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.850
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.848
GATA28 Arabidopsis thaliana AT1G51600 D 0.842
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.842
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.842
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.842
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.842
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.842
GATA24 Arabidopsis thaliana AT3G21175 D 0.840
Bo1g108240 Brassica oleracea Bo1g108240 I 0.840
Bo5g103560 Brassica oleracea Bo5g103560 I 0.840
Bra023900 Brassica rapa Bra023900 I 0.840
Bra031258 Brassica rapa Bra031258 I 0.840
Si006750m.g Setaria italica Si006750m.g I 0.840
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.840
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.840
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.840
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.840
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.840
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.837
Cla015736 Citrullus lanatus Cla015736 I 0.837
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.837
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.836
F775_08559 Aegilops tauschii F775_08559 I 0.836
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.836
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.836
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.836
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.836
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.836
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.836
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.836
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.836
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.836
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.836
OB06G33840 Oryza brachyantha OB06G33840 I 0.836
OBART02G03780 Oryza barthii OBART02G03780 I 0.836
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.836
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.836
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.836
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.836
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.836
GATA17 Oryza sativa OS02G0148500 I 0.836
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.836
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.836
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.836
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.836
TCM_027858 Theobroma cacao TCM_027858 I 0.836
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.836
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.836
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.836
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.836
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.836
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.836
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.836
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.836
Ca_17522 Cicer arietinum Ca_17522 I 0.836
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.836
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.836
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.836
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.836
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.836
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.836
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.836
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.836
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.836
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.836
PK11000.1 Cannabis sativa PK11000.1 I 0.835
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.832
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.832
Bo3g181450 Brassica oleracea Bo3g181450 I 0.831
Bra014292 Brassica rapa Bra014292 I 0.831
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.831
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.831
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.831
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.831
OB02G13220 Oryza brachyantha OB02G13220 I 0.831
OBART06G26250 Oryza barthii OBART06G26250 I 0.831
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.831
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.831
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.831
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.831
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.831
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.831
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.831
OS06G0698900 Oryza sativa OS06G0698900 D 0.831
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.831
Pm013048 Prunus mume Pm013048 I 0.831
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.831
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.831
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.821
Ca_01471 Cicer arietinum Ca_01471 I 0.814
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.814
ZIM Arabidopsis thaliana AT4G24470 D 0.809
Bo1g039000 Brassica oleracea Bo1g039000 I 0.809
Bra013805 Brassica rapa Bra013805 I 0.809
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.809
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.809
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.809
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.809
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.809
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.809
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.805