CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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RGL2
(
Arabidopsis lyrata
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
fgenesh2_kg.3__292__AT3G03450.1
T200124_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RGL2
M02031_2.00
Arabidopsis thaliana
NGTACGGHN
NDCCGTACN
PBM
Weirauch et al.(2014)
pTH8681
0.909
0.909
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_kg.3__292__AT3G03450.1
GRAS
174
536
LVHALVACAEAIQQENLNLADALVKRVGTLAASQAGAMGKVATYFAQALARRIYRDYTAETDVSGGSFEEVLQMHFYDSCPYLKFAHFTANQAILEAVATARRVHVIDLGLNQGMQWPALMQALALRPGGPPSFRLTGIGPPQTENSDSLQQLGWKLAQFAQNMGVEFEFKGLATESLSDLEPEMFETRPDSETLVVNSVFELHRLLARSGSIEKLLNTVKAIKPSIITVVEQEANHNGIVFLDRFNEALHYYSSLFDSLEDSGSLPSQDRVMSEVYLGRQILNVVAAEGSDRVERHETVAQWRIRMKSAGFDPVHLGSSAFKQASMLLSLYATGDGYRVEENDGCLMIGWQTRPLITTSAWK
Links
Other
GRAS
family TFs
Other
Arabidopsis lyrata
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
CC1G_01834
Coprinopsis cinerea
CC1G_01834
N
EDP44665.1
Malassezia globosa
EDP44665.1
N
EuGene.0000160082
Micromonas pusilla
EuGene.0000160082
N
fgenesh1_pg.C_Chr_17.0001000037
Ostreococcus tauri
fgenesh1_pg.C_Chr_17.0001000037
N
gw1.16.233.1
Ostreococcus RCC809
gw1.16.233.1
N
OSTLU_27999
Ostreococcus lucimarinus
OSTLU_27999
N
SCHCODRAFT_269858
Schizophyllum commune
SCHCODRAFT_269858
N