CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0001s24870
(
Populus trichocarpa
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
POPTR_0001s24870
T201166_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0001s24870.1
GRAS
284
655
MRTLLIHSAEAVAVNDHRTATELLTQIRQHSTPFGDGSQRLAHCFANALETRIAGTGSEVYATLAAKRVTAACILKAGRLYISACPFMIMSNFFAEQNIMDLAENATRLHIIHFGILYGFPWPSLIQRLSTRPSGPPVLCITGIECSQTGYESAAVLEDIGRYLASYCEKFNVPFNYNAISQKWENVQLEDLKIDRDEVTVVSSLYRFQHLLDETVALNCQRDAVLNLIKRINPAIFIHGIINGAYNSPFFVSRFREALFYYSSLFDMLEANTAREDPERMVFEQEVFGKEILNVISCEGWDRLERPEKYKQWQARNARAGLRQLPLKEGIMKQVREQVKSSYHKDFLMDQDGQWMLQGWKGRILFAISCWK
Links
Other
GRAS
family TFs
Other
Populus trichocarpa
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACOC_0000614601
Angiostrongylus costaricensis
ACOC_0000614601
I
augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf26567-processed-gene-0.0
I
augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0
Meloidogyne floridensis
augustus_masked-nMf.1.1.scaf34489-processed-gene-0.0
I
DME_0000497501
Dracunculus medinensis
DME_0000497501
I
GSPATT00006443001
Paramecium tetraurelia
GSPATT00006443001
N
GSPATT00009745001
Paramecium tetraurelia
GSPATT00009745001
N
Ogr00419
Ophisaurus gracilis
Ogr00419
I
TFDP2
Bos taurus
ENSBTAG00000006222
I
Traes_3AL_D7DE23839
Triticum aestivum
Traes_3AL_D7DE23839
I
Traes_3DL_1E9DECCEA
Triticum aestivum
Traes_3DL_1E9DECCEA
I
TVAG_077130
Trichomonas vaginalis
TVAG_077130
I