CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc03g123400.1
(
Solanum lycopersicum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Solyc03g123400.1
T201557_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc03g123400.1.1
GRAS
160
541
AEHLLNPCAAAITVGNMNRVQHLLYVLHELASFTGDANHRLAAHGLRALTHHLSSPGSSSASSGTIGVTNFSSANHKFFRDSLINFIDVSPWFRIPNNIANSSVLQIIGQQDRLKNLHILDIGVSHGFQWPTLLEELTRRSGGPPPLVRLTVITPTTENGELTGTPFVIGPPGYDFSSQLLAYAKAININLQINRLDNFPLQNLNSQIINSSSDETLVICAQFRLHNLNHTIPDDRTDLLKILKSLDPKGLVLSENNTECSCNSCGDFATTFSRRVEYLWRFLDSTSVAYKGRESEERRMMEGEAAKALTNMGEMNERKEKWCERMRSAGFVKAVFGEDAIDGARALLRKYDSNWEIRVEEKDGCVDLWWKGQPISFCSLWK
Links
Other
GRAS
family TFs
Other
Solanum lycopersicum
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava2753.m1
Manihot esculenta
cassava2753.m1
N
0.716
cassava34800.m1
Manihot esculenta
cassava34800.m1
N
0.736
gene25548-v1.0-hybrid
Fragaria vesca
gene25548-v1.0-hybrid
N
0.702
Gorai.011G058900
Gossypium raimondii
Gorai.011G058900
N
0.722
mgf000450m
Mimulus guttatus
mgf000450m
N
0.733
orange1.1g008559m.g
Citrus sinensis
orange1.1g008559m.g
N
0.738
PGSC0003DMG400039263
Solanum tuberosum
PGSC0003DMG400039263
N
0.975
PK20670.1
Cannabis sativa
PK20670.1
N
0.730
Pm013263
Prunus mume
Pm013263
N
0.708
POPTR_0001s16890
Populus trichocarpa
POPTR_0001s16890
N
0.733
POPTR_0003s06380
Populus trichocarpa
POPTR_0003s06380
N
0.725
PRUPE_ppa022653mg
Prunus persica
PRUPE_ppa022653mg
N
0.714
SapurV1A.0002s0940
Salix purpurea
SapurV1A.0002s0940
N
0.725
TCM_029136
Theobroma cacao
TCM_029136
N
0.738
VIT_09s0002g01190
Vitis vinifera
VIT_09s0002g01190
N
0.719