CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc04g011630.1
(
Solanum lycopersicum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Solyc04g011630.1
T201558_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc04g011630.1.1
GRAS
1
167
MYRFRNLLDETVVVNSPRDIVLNLIRKLNPDVYIQGIVNGAYNAPFFITRFREALFHYSSVFDMLEANIPREIPERLLVEKLIFGREAMNVVACEAAERIERPETYKQWQVRNTRAGFRQLPLNEEILRMAKDRVKAYHKDFVIDVDGHWLLQGWKGRIMYAASTWK
Links
Other
GRAS
family TFs
Other
Solanum lycopersicum
TFs
11 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Aquca_009_00954
Aquilegia coerulea
Aquca_009_00954
N
0.725
cassava15723.m1
Manihot esculenta
cassava15723.m1
N
0.707
cassava31335.valid.m1
Manihot esculenta
cassava31335.valid.m1
N
0.749
evm.TU.supercontig_1.422
Carica papaya
evm.TU.supercontig_1.422
N
0.743
Gorai.011G266200
Gossypium raimondii
Gorai.011G266200
N
0.754
Lus10023404.g
Linum usitatissimum
Lus10023404.g
N
0.725
PGSC0003DMG400027198
Solanum tuberosum
PGSC0003DMG400027198
N
0.760
POPTR_0008s05750
Populus trichocarpa
POPTR_0008s05750
N
0.754
SapurV1A.0451s0060
Salix purpurea
SapurV1A.0451s0060
N
0.749
Solyc05g053090.1
Solanum lycopersicum
Solyc05g053090.1
N
0.760
TCM_042705
Theobroma cacao
TCM_042705
N
0.760