CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Solyc05g053090.1
(
Solanum lycopersicum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF03514 (GRAS)
IPR005202
Solyc05g053090.1
T201561_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Solyc05g053090.1.1
GRAS
370
740
LRTLLTLCAQAVAVGNQRTANELLKKIRESSSPMGDGMQRLAHYFADGLEARMAGSGTHIYKALITRPVSAADVLKAYHLLLAACPFRTMSSFFSNKTIMNLAEKASTVHIIDIGIMWGFQWPGLIQRLASRPGGPPKLRITGIDFPNPGFRPAERVEETGRRLANYAESFKVPFEFNAIAQKWETVKLEDLKINKGEVLVVNCLYRFRNLLDETVVVNSPRDVFLNLIRRLNPDVFILGTVNGGYNAPFFISRFREALFHYSSLFDMLETIIPREVHERMLVEKNIIGQEAMNAIACEGAERIERPETYKQWQVRILKAGFRQLPLDEEIMRMTTERFKVYDKNFIIDVDSEWLLQGWKGRIASALSMWK
Links
Other
GRAS
family TFs
Other
Solanum lycopersicum
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
29950.m001173
Ricinus communis
29950.m001173
I
0.000
anac047
Arabidopsis lyrata
fgenesh2_kg.3__367__AT3G04070.1
I
0.000
anac047
Vitis vinifera
VIT_08s0007g07670
I
0.000
Bo1g152220
Brassica oleracea
Bo1g152220
I
0.000
Bostr.2570s0301
Boechera stricta
Bostr.2570s0301
I
0.000
Bra031949
Brassica rapa
Bra031949
I
0.000
Bra040152
Brassica rapa
Bra040152
I
0.000
Cagra.2026s0001
Capsella grandiflora
Cagra.2026s0001
I
0.000
Carubv10014000m.g
Capsella rubella
Carubv10014000m.g
I
0.000
cassava22631.valid.m1
Manihot esculenta
cassava22631.valid.m1
I
0.000
cassava35701.valid.m1
Manihot esculenta
cassava35701.valid.m1
I
0.000
Ciclev10020717m.g
Citrus clementina
Ciclev10020717m.g
I
0.000
GLYMA12G22790
Glycine max
GLYMA12G22790
I
0.000
Gorai.007G267900
Gossypium raimondii
Gorai.007G267900
I
0.000
Gorai.013G191800
Gossypium raimondii
Gorai.013G191800
I
0.000
Lus10003269.g
Linum usitatissimum
Lus10003269.g
I
0.000
Lus10006547.g
Linum usitatissimum
Lus10006547.g
I
0.000
Lus10042531.g
Linum usitatissimum
Lus10042531.g
I
0.000
MDP0000674514
Malus domestica
MDP0000674514
I
0.000
NAC047
Arabidopsis thaliana
AT3G04070
D
0.000
orange1.1g017665m.g
Citrus sinensis
orange1.1g017665m.g
I
0.000
POPTR_0013s05080
Populus trichocarpa
POPTR_0013s05080
I
0.000
POPTR_0019s04690
Populus trichocarpa
POPTR_0019s04690
I
0.000
SapurV1A.0867s0160
Salix purpurea
SapurV1A.0867s0160
I
0.000
SapurV1A.1058s0080
Salix purpurea
SapurV1A.1058s0080
I
0.000
SapurV1A.1196s0040
Salix purpurea
SapurV1A.1196s0040
I
0.000
SapurV1A.2115s0010
Salix purpurea
SapurV1A.2115s0010
I
0.000
TCM_026030
Theobroma cacao
TCM_026030
I
0.000
Thhalv10021011m.g
Eutrema salsugineum
Thhalv10021011m.g
I
0.000