CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Da00564
(
Panicum virgatum
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Pavir.Da00564
T202988_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Da00564.1.p
GRAS
67
360
VLAAAAAPSAILDAVEGARRVHILDLDAAHGVQWPPLLQAIAERADPAAGPPEVRITGAGADRDTLLRTGSRLRAFARSIQLPFHFTPLLLSSAATQHQPVAGGSTTTASSEATTSLDLHPDETLAVNCIMFLHKLGGQDEVAAFLKWVKAMAPAVVTIAERETVGGGYDRIDDLPQRAAVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAALGPAGGRWWRGLERWGAAARAAGFAARPLSAFAVSQARLLLRLHYPSEGYLLQEARGACFLGWQTRPLLSVSSWQ
Links
Other
GRAS
family TFs
Other
Panicum virgatum
TFs
13 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
BGIOSGA023255
Oryza indica
BGIOSGA023255
N
0.838
BRADI1G36180
Brachypodium distachyon
BRADI1G36180
N
0.768
GRMZM2G114680
Zea mays
GRMZM2G114680
N
0.900
MLOC_76302
Hordeum vulgare
MLOC_76302
N
0.760
OGLUM06G21860
Oryza glumaepatula
OGLUM06G21860
N
0.841
OMERI06G21310
Oryza meridionalis
OMERI06G21310
N
0.845
ONIVA06G24530
Oryza nivara
ONIVA06G24530
N
0.841
OPUNC06G18940
Oryza punctata
OPUNC06G18940
N
0.804
ORGLA06G0172100
Oryza glaberrima
ORGLA06G0172100
N
0.838
ORUFI06G22200
Oryza rufipogon
ORUFI06G22200
N
0.838
Sb10g023950
Sorghum bicolor
Sb10g023950
N
0.908
Si008068m.g
Setaria italica
Si008068m.g
N
0.915
Traes_7DL_44FCA17C4
Triticum aestivum
Traes_7DL_44FCA17C4
N
0.712