CpipJ_CPIJ016464 (Culex pipiens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 CpipJ_CPIJ016464 T203735_2.00 Broad (2016-May-1)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.809 0.630
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.809 0.630
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.809 0.630
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.809 0.630
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.809 0.630
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.809 0.630
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.809 0.630
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.809 0.630
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.809 0.630
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.720 0.391
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.720 0.391
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.720 0.391
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CpipJ_CPIJ016464-RA Homeodomain 387 432

Links

Other Homeodomain family TFs
Other Culex pipiens TFs

1247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA014093 Oryza indica BGIOSGA014093 N 0.000
BGIOSGA014094 Oryza indica BGIOSGA014094 N 0.000
BRADI5G26100 Brachypodium distachyon BRADI5G26100 N 0.000
LPERR02G09050 Leersia perrieri LPERR02G09050 N 0.000
LPERR04G04010 Leersia perrieri LPERR04G04010 N 0.000
MLOC_50915 Hordeum vulgare MLOC_50915 N 0.000
OB04G36540 Oryza brachyantha OB04G36540 N 0.000
OBART04G29550 Oryza barthii OBART04G29550 N 0.000
OBART04G29560 Oryza barthii OBART04G29560 N 0.000
OGLUM04G29460 Oryza glumaepatula OGLUM04G29460 N 0.000
OGLUM04G29470 Oryza glumaepatula OGLUM04G29470 N 0.000
OMERI04G24970 Oryza meridionalis OMERI04G24970 N 0.000
OMERI04G24980 Oryza meridionalis OMERI04G24980 N 0.000
ONIVA04G28090 Oryza nivara ONIVA04G28090 N 0.000
OPUNC04G27110 Oryza punctata OPUNC04G27110 N 0.000
OPUNC04G27120 Oryza punctata OPUNC04G27120 N 0.000
ORGLA03G0402000 Oryza glaberrima ORGLA03G0402000 N 0.000
ORGLA04G0258500 Oryza glaberrima ORGLA04G0258500 N 0.000
ORGLA04G0258600 Oryza glaberrima ORGLA04G0258600 N 0.000
ORUFI04G31260 Oryza rufipogon ORUFI04G31260 N 0.000
OS04G0676650 Oryza sativa OS04G0676650 N 0.000
Traes_2AL_B518C11E4 Triticum aestivum Traes_2AL_B518C11E4 N 0.000