HDG1 (Arabidopsis thaliana)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 AT3G61150 T204496_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDG1
M06917_2.00		 Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_col100_a		 (Direct) (Direct)
HDG1
M06918_2.00		 Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG1_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ANL2
M02046_2.00 		Arabidopsis thaliana
NCATTWATKNN
NNMATWAATGN		 PBM
Weirauch et al.(2014)
pTH8244 		0.839 0.842
ANL2
M06919_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_col_a 		0.839 0.842
ANL2
M06920_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
ANL2_colamp_a 		0.839 0.842
PK24181.1
M01252_2.00 		Cannabis sativa
NNNNNNNHDH
DHDNNNNNNN		 PBM
Lambert et al.(2019)
pTH11300 		0.822 0.807
HDG11
M02039_2.00 		Arabidopsis thaliana
DCATTWAWKD
HMWTWAATGH		 PBM
Weirauch et al.(2014)
pTH7664 		0.806 0.772
HDG11
M06904_2.00 		Arabidopsis thaliana
DCATTWAWTRH
DYAWTWAATGH		 Dap-seq
OMalley et al.(2016)
EDT1_col 		0.806 0.772
PDF2
M06921_2.00 		Arabidopsis thaliana
WNVGAATATTCYHTN
NADRGAATATTCBNW		 Dap-seq
OMalley et al.(2016)
PDF2_col 		0.804 0.772
PDF2
M10625_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PDF2_01 		0.804 0.772
ATML1
M02048_2.00 		Arabidopsis thaliana
NNHNRHYRNN
NNYRDYNDNN		 PBM
Weirauch et al.(2014)
pTH8203 		0.802 0.754
ATML1
M10626_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ML1_01 		0.802 0.754
HDG9
M10628_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG9_01 		0.786 0.649
HDG7
M06931_2.00 		Arabidopsis thaliana
DCATTAAWTRH
DYAWTTAATGH		 Dap-seq
OMalley et al.(2016)
HDG7_col_a 		0.781 0.702
HDG7
M10629_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HDG7_01 		0.781 0.702
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G61150.1 Homeodomain 111 167

Links

Other Homeodomain family TFs
Other Arabidopsis thaliana TFs

619 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
21342_YDR034C Saccharomyces bayanus 21342_YDR034C I
3344_Multiple Saccharomyces mikatae 3344_Multiple I
3859_YDR034C Saccharomyces paradoxus 3859_YDR034C I
AGOS_ABL099W Ashbya gossypii AGOS_ABL099W N
CAGL0K11902g Candida glabrata CAGL0K11902g I
Ecym_5131 Eremothecium cymbalariae Ecym_5131 I
KAFR_0E01250 Kazachstania africana KAFR_0E01250 I
KLLA0_F04213g Kluyveromyces lactis KLLA0_F04213g I
KLTH0C07480g Lachancea thermotolerans KLTH0C07480g N
KLTH0C07480g Kluyveromyces thermotolerans KLTH0C07480g N
KNAG_0H01260 Kazachstania naganishii KNAG_0H01260 I
Kpol_1061p11 Vanderwaltozyma polyspora Kpol_1061p11 I
Kwal_23058 Kluyveromyces waltii Kwal_23058 N
LYS14 Saccharomyces cerevisiae YDR034C D
NDAI_0A05750 Naumovozyma dairenensis NDAI_0A05750 I
SAKL0D03586g Lachancea kluyveri SAKL0D03586g I
SKUD_203807 Saccharomyces kudriavzevii SKUD_203807 I
SU7_0595 Saccharomyces arboricola SU7_0595 I
TBLA_0I01890 Tetrapisispora blattae TBLA_0I01890 I
TDEL_0D03610 Torulaspora delbrueckii TDEL_0D03610 N
TPHA_0M01040 Tetrapisispora phaffii TPHA_0M01040 I
ZBAI_04585 Zygosaccharomyces bailii ZBAI_04585 I
ZBAI_06624 Zygosaccharomyces bailii ZBAI_06624 I
ZYRO0A03058g Zygosaccharomyces rouxii ZYRO0A03058g I