CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Bo4g149670 *(Brassica oleracea)* Homeodomain
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00046 (Homeobox)	IPR001356	Bo4g149670	T204921_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ATHB-6 M02040_2.00	Arabidopsis thaliana	HATNATTDN	NHAATNATD	PBM Weirauch et al.(2014) pTH7670	0.814	0.965
ATHB-6 M06909_2.00	Arabidopsis thaliana	NNNHATKATTR	YAATMATDNNN	Dap-seq OMalley et al.(2016) ATHB6_col_a	0.814	0.965
ATHB-6 M06910_2.00	Arabidopsis thaliana	NCAATAATTRN	NYAATTATTGN	Dap-seq OMalley et al.(2016) ATHB6_colamp_a	0.814	0.965
ATHB-16 M02050_2.00	Arabidopsis thaliana	YAATMATT	AATKATTR	PBM Weirauch et al.(2014) pTH7270	0.811	0.895
estExt_gwp_gw1.C_70211 M02220_2.00	Physcomitrella patens	HMATNANDNN	NNHNTNATKD	PBM Weirauch et al.(2014) pTH8489	0.805	0.807
HAT5 M06914_2.00	Arabidopsis thaliana	NHAATAATTDW	WHAATTATTDN	Dap-seq OMalley et al.(2016) HAT5_col_a	0.793	0.772
HAT5 M06915_2.00	Arabidopsis thaliana	WNYAATAATTRWDN	NHWYAATTATTRNW	Dap-seq OMalley et al.(2016) HAT5_colamp_a	0.793	0.772
HAT5 M02683_2.00	Arabidopsis thaliana	SCAATAATTNNV	BNNAATTATTGS	SELEX Mathelier et al.(2014) MA0008.2	0.793	0.772
HAT5 M10624_2.00	Arabidopsis thaliana	YSCAATAATTNNVN	NBNNAATTATTGSR	Transfac Matys et al.(2006) P$ATHB1_01	0.793	0.772
ATHB-5 M06932_2.00	Arabidopsis thaliana	NYAATMATTND	HNAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_col_a	0.788	0.860
ATHB-5 M06933_2.00	Arabidopsis thaliana	NYAATMATTN	NAATKATTRN	Dap-seq OMalley et al.(2016) ATHB5_colamp_a	0.788	0.860
ATHB-5 M02684_2.00	Arabidopsis thaliana	CAATVATTGVVSV	BSBBCAATBATTG	SELEX Mathelier et al.(2014) MA0110.2	0.788	0.860
ATHB-5 M10630_2.00	Arabidopsis thaliana	CAATVATTG	CAATBATTG	Transfac Matys et al.(2006) P$ATHB5_01	0.788	0.860
ATHB-13 M06900_2.00	Arabidopsis thaliana	HYAATAATTDD	HHAATTATTRD	Dap-seq OMalley et al.(2016) ATHB13_col_a	0.781	0.772
ATHB-13 M06901_2.00	Arabidopsis thaliana	NYAATAATTRW	WYAATTATTRN	Dap-seq OMalley et al.(2016) ATHB13_colamp_a	0.781	0.772
ATHB-21 M06907_2.00	Arabidopsis thaliana	NNWHCAATWATTDN	NHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB21_col_a	0.715	0.649
ATHB-21 M06908_2.00	Arabidopsis thaliana	WWDDNNNHAATWATTGDTNN	NNAHCAATWATTDNNNHHWW	Dap-seq OMalley et al.(2016) ATHB21_colamp_a	0.715	0.649
HB-5 M06924_2.00	Arabidopsis thaliana	NNAHCAATWATTKDNNNHWWH	DWWDNNNHMAATWATTGDTNN	Dap-seq OMalley et al.(2016) ATHB40_col_a	0.714	0.632
HB-5 M06925_2.00	Arabidopsis thaliana	HHAATWATTGDWNN	NNWHCAATWATTDD	Dap-seq OMalley et al.(2016) ATHB40_colamp_a	0.714	0.632
ATHB-53 M06934_2.00	Arabidopsis thaliana	HMAATAATTRD	HYAATTATTKD	Dap-seq OMalley et al.(2016) ATHB53_col_a	0.709	0.614
ATHB-53 M06935_2.00	Arabidopsis thaliana	NNWHCAATWATTDDN	NHHAATWATTGDWNN	Dap-seq OMalley et al.(2016) ATHB53_colamp_a	0.709	0.614
PK20392.1 M01250_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11331	0.638	0.737
PK20392.1 M01251_2.00	Cannabis sativa	NHAATMATDN	NHATKATTDN	PBM Lambert et al.(2019) pTH11332	0.638	0.737
ATHB-20 M06912_2.00	Arabidopsis thaliana	HYAATAATTRD	HYAATTATTRD	Dap-seq OMalley et al.(2016) ATHB20_col_a	0.622	0.737
ATHB-20 M06913_2.00	Arabidopsis thaliana	HYAATMATTRD	HYAATKATTRD	Dap-seq OMalley et al.(2016) ATHB20_colamp_a	0.622	0.737
For this family, TFs with SR scores > 0.599* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Bo4g149670.1	Homeodomain	53	109	TEKKRRLSINQVKALEKNFELENKLEPERKVKLAQELGLQTRQVAVWFQNRRARWKT

Links
Other Homeodomain family TFs
Other *Brassica oleracea* TFs

784 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R011464	Calypte anna	Aan_R011464	N	0.000
Alligator_sinensis_CCG016667.1	Alligator sinensis	Alligator_sinensis_CCG016667.1	N	0.000
ENSAPLG00000014876	Anas platyrhynchos	ENSAPLG00000014876	N	0.000
ENSBTAP00000020376-D1	Bos grunniens	ENSBTAP00000020376-D1	N	0.000
ENSFALG00000012590	Ficedula albicollis	ENSFALG00000012590	N	0.000
ENSMPUG00000013360	Mustela putorius furo	ENSMPUG00000013360	N	0.000
ENSNLEG00000004772	Nomascus leucogenys	ENSNLEG00000004772	N	0.000
ENSOARG00000003358	Ovis aries	ENSOARG00000003358	N	0.000
ENSP00000362013	Macaca fascicularis	ENSP00000362013	N	0.000
ENSPANG00000009451	Papio anubis	ENSPANG00000009451	N	0.000
ENSPPYG00000016614	Pongo abelii	ENSPPYG00000016614	N	0.000
ENSPSIG00000009755	Pelodiscus sinensis	ENSPSIG00000009755	N	0.000
ENSSHAG00000004599	Sarcophilus harrisii	ENSSHAG00000004599	N	0.000
ENSSTOG00000022996	Ictidomys tridecemlineatus	ENSSTOG00000022996	N	0.000
ENSTBEG00000012133	Tupaia belangeri	ENSTBEG00000012133	N	0.000
ENSTSYG00000003874	Tarsius syrichta	ENSTSYG00000003874	N	0.000
Myotis_brandtii_Trerf1_10015386	Myotis brandtii	Myotis_brandtii_Trerf1_10015386	N	0.000
Ogr07462	Ophisaurus gracilis	Ogr07462	N	0.000
Pvit_13408	Pogona vitticeps	Pvit_13408	N	0.000
TRERF1	Loxodonta africana	ENSLAFG00000007825	N	0.000
TRERF1	Equus caballus	ENSECAG00000016971	N	0.000
TRERF1	Felis catus	ENSFCAG00000011210	N	0.000
TRERF1	Homo sapiens	ENSG00000124496	N	0.000
TRERF1	Gallus gallus	ENSGALG00000009896	N	0.000
TRERF1	Bos taurus	ENSBTAG00000015321	N	0.000
TRERF1	Canis familiaris	ENSCAFG00000001642	N	0.000
TRERF1	Choloepus hoffmanni	ENSCHOG00000006120	N	0.000
TRERF1	Tursiops truncatus	ENSTTRG00000014065	N	0.000
TRERF1	Gorilla gorilla	ENSGGOG00000012813	N	0.000
TRERF1	Taeniopygia guttata	ENSTGUG00000003250	N	0.000
TRERF1	Ornithorhynchus anatinus	ENSOANG00000008467	N	0.000
TRERF1	Meleagris gallopavo	ENSMGAG00000013894	N	0.000
TRERF1	Sus scrofa	ENSSSCG00000001639	N	0.000
TRERF1	Myotis lucifugus	ENSMLUG00000016748	N	0.000
Trerf1	Rattus norvegicus	ENSRNOG00000022598	N	0.000
TRERF1	Pteropus vampyrus	ENSPVAG00000007626	N	0.000
TRERF1	Monodelphis domestica	ENSMODG00000019042	N	0.000
TRERF1	Cavia porcellus	ENSCPOG00000015717	N	0.000
TRERF1	Callithrix jacchus	ENSCJAG00000004347	N	0.000
TRERF1	Otolemur garnettii	ENSOGAG00000025610	N	0.000
TRERF1	Anolis carolinensis	ENSACAG00000001080	N	0.000

Bo4g149670 (Brassica oleracea) Homeodomain

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

784 Related TFs

Bo4g149670 **(Brassica oleracea)
Homeodomain**