Bo5g027690 (Brassica oleracea)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bo5g027690 T204932_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATH1
M10627_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATH1_01 		0.780 0.673
Q5EVH4_OIKDI
M02227_2.00 		Oikopleura dioica
NTGACAKN
NMTGTCAN		 PBM
Weirauch et al.(2014)
pTH6041 		0.636 0.571
MEIS3
M03093_2.00 		Homo sapiens
DTGACANN
NNTGTCAH		 SELEX
Jolma et al.(2013)
MEIS3_1 		0.611 0.429
MEIS3
M03094_2.00 		Homo sapiens
TGACAGSTGTCA
TGACASCTGTCA		 SELEX
Jolma et al.(2013)
MEIS3_2 		0.611 0.429
MEIS3
M04951_2.00 		Homo sapiens
TGWCABVTGWCA
TGWCABVTGWCA		 SELEX
Yin et al.(2017)
MEIS3_eDBD_HT-SELEX 		0.611 0.429
MEIS3
M04952_2.00 		Homo sapiens
YGWCABVTGWCR
YGWCABVTGWCR		 SELEX
Yin et al.(2017)
MEIS3_eDBD_Methyl-HT-SELEX 		0.611 0.429
KNAT3
M02051_2.00 		Arabidopsis thaliana
NNNGACVBNN
NNVBGTCNNN		 PBM
Weirauch et al.(2014)
pTH7600 		0.601 0.449
KNAT4
M01238_2.00 		Arabidopsis thaliana
NNGACNNNN
NNNNGTCNN		 PBM
Lambert et al.(2019)
pTH9968 		0.601 0.429
KNAT7
M01064_2.00 		Arabidopsis thaliana
TGACRKST
ASMYGTCA		 PBM
Sullivan et al.(2014)
pTH9798 		0.600 0.408
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g027690.1 Homeodomain 354 405

Links

Other Homeodomain family TFs
Other Brassica oleracea TFs

1213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL000181 Aedes aegypti AAEL000181 N
AALB009551 Anopheles albimanus AALB009551 N
AARA006496 Anopheles arabiensis AARA006496 N
AATE004647 Anopheles atroparvus AATE004647 N
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N
ACEP25803 Atta cephalotes ACEP25803 N
ACOM033657 Anopheles coluzzii ACOM033657 N
ACUA025632 Anopheles culicifacies ACUA025632 N
ACYPI001480 Acyrthosiphon pisum ACYPI001480 N
ADAC005840 Anopheles darlingi ADAC005840 N
ADIR010123 Anopheles dirus ADIR010123 N
AEPI009418 Anopheles epiroticus AEPI009418 N
AFAF001135 Anopheles farauti AFAF001135 N
AFUN001272 Anopheles funestus AFUN001272 N
AGAP001099 Anopheles gambiae AGAP001099 N
AMAM022417 Anopheles maculatus AMAM022417 N
AMEC012325 Anopheles melas AMEC012325 N
AMEM003228 Anopheles merus AMEM003228 N
AMIN002364 Anopheles minimus AMIN002364 N
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N
AQUA001810 Anopheles quadriannulatus AQUA001810 N
ASIS018375 Anopheles sinensis ASIS018375 N
ASTEI10740 Anopheles stephensi ASTEI10740 N
BGIBMGA010711 Bombyx mori BGIBMGA010711 N
CBG11867 Caenorhabditis briggsae CBG11867 N
CBN07735 Caenorhabditis brenneri CBN07735 N
CBN31697 Caenorhabditis brenneri CBN31697 N
Cflo_01038--XP_625055.2_APIME Camponotus floridanus Cflo_01038--XP_625055.2_APIME N
CGI_10018256 Crassostrea gigas CGI_10018256 N
CLEC008450 Cimex lectularius CLEC008450 N
CPIJ007271 Culex quinquefasciatus CPIJ007271 N
CpipJ_CPIJ007271 Culex pipiens CpipJ_CPIJ007271 N
CRE14258 Caenorhabditis remanei CRE14258 N
DAPPUDRAFT_304382 Daphnia pulex DAPPUDRAFT_304382 N
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N
ENSGGOG00000025016 Gorilla gorilla ENSGGOG00000025016 I
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N
GA10956 Drosophila pseudoobscura FBgn0071012 N
GB42921 Apis mellifera GB42921 N
GE10775 Drosophila yakuba FBgn0228617 N
GF23180 Drosophila ananassae FBgn0100174 N
GG12321 Drosophila erecta FBgn0104611 N
GH18462 Drosophila grimshawi FBgn0125929 N
GI24041 Drosophila mojavensis FBgn0146764 N
GJ23670 Drosophila virilis FBgn0210767 N
GK13168 Drosophila willistoni FBgn0215177 N
GL13862 Drosophila persimilis FBgn0151467 N
GM22062 Drosophila sechellia FBgn0176933 N
HCOI00076900 Haemonchus contortus HCOI00076900 N
HCOI01215700 Haemonchus contortus HCOI01215700 N
HMEL006186 Heliconius melpomene HMEL006186 N
Hsal_02676--XP_625055.2_APIME Harpegnathos saltator Hsal_02676--XP_625055.2_APIME N
KGM_06850 Danaus plexippus KGM_06850 N
L798_12146 Zootermopsis nevadensis L798_12146 N
L889_g13125 Steinernema feltiae L889_g13125 N
L898_g14011 Steinernema monticolum L898_g14011 N
LCUP007789 Lucilia cuprina LCUP007789 N
LDEC007066 Leptinotarsa decemlineata LDEC007066 N
LLOJ004028 Lutzomyia longipalpis LLOJ004028 N
LotgiG176647 Lottia gigantea LotgiG176647 N
MDOA008474 Musca domestica MDOA008474 N
MESCA007902 Megaselia scalaris MESCA007902 N
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N
Minc06622 Meloidogyne incognita Minc06622 N
NECAME_01599 Necator americanus NECAME_01599 N
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N
pbrm-1 Caenorhabditis elegans WBGene00007042 N
PHUM244090 Pediculus humanus PHUM244090 N
polybromo Drosophila melanogaster FBgn0039227 N
PPAI002532 Phlebotomus papatasi PPAI002532 N
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N
RPRC014309 Rhodnius prolixus RPRC014309 N
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N
SINV16486 Solenopsis invicta SINV16486 N
SMAR009325 Strigamia maritima SMAR009325 N
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N
TC000618 Tribolium castaneum TC000618 N
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N
tetur21g01330 Tetranychus urticae tetur21g01330 N
tox2 Takifugu rubripes ENSTRUG00000013848 N
YQE_05481 Dendroctonus ponderosae YQE_05481 N