Bra007637 (Brassica rapa)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 Bra007637 T205056_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-12
M00865_2.00 		Arabidopsis thaliana
NNNNNNNN
NNNNNNNN		 PBM
Franco-Zorrilla et al.(2014)
ATHB12 		0.867 0.965
ATHB-12
M02045_2.00 		Arabidopsis thaliana
BHWWWWWWDV
BHWWWWWWDV		 PBM
Weirauch et al.(2014)
pTH7207 		0.867 0.965
ATHB-7
M02043_2.00 		Arabidopsis thaliana
NHWTGATTGN
NCAATCAWDN		 PBM
Weirauch et al.(2014)
pTH8090 		0.666 0.860
ATHB-7
M06911_2.00 		Arabidopsis thaliana
NHYCAATCATTSW
WSAATGATTGRDN		 Dap-seq
OMalley et al.(2016)
ATHB7_col_a 		0.666 0.860
Q39944_HELAN
M10802_2.00 		Helianthus annuus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$HAHB4_01 		0.630 0.579
PK20392.1
M01250_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11331 		0.618 0.614
PK20392.1
M01251_2.00 		Cannabis sativa
NHAATMATDN
NHATKATTDN		 PBM
Lambert et al.(2019)
pTH11332 		0.618 0.614
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra007637.1-P Homeodomain 30 86

Links

Other Homeodomain family TFs
Other Brassica rapa TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O1_01405 Capronia coronata A1O1_01405 N
CPAG_02980 Candida parapsilosis CPAG_02980 N
EURHEDRAFT_460772 Aspergillus ruber EURHEDRAFT_460772 N
HMPREF1120_00436 Exophiala dermatitidis HMPREF1120_00436 N
MYCTH_2118798 Myceliophthora thermophila MYCTH_2118798 N
PV06_06006 Exophiala oligosperma PV06_06006 N
PV07_06220 Cladophialophora immunda PV07_06220 N
PV08_04953 Exophiala spinifera PV08_04953 N
PV10_02992 Exophiala mesophila PV10_02992 N
PV11_09753 Exophiala sideris PV11_09753 N
S40285_05408 Stachybotrys chlorohalonata S40285_05408 N
Z518_10649 Rhinocladiella mackenziei Z518_10649 N