CRE23969 (Caenorhabditis remanei)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 CRE23969 T206286_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Lhx1
M00405_2.00
Mus musculus
TRATDRNNN

NNNYHATYA
PBM
Berger et al.(2008)
Lhx1_2240
0.867 0.965
Lhx5
M00445_2.00
Mus musculus
TAATKRNNN

NNNYMATTA
PBM
Berger et al.(2008)
Lhx5_2279
0.867 0.965
LHX1
M05410_2.00
Homo sapiens
NTRATBRN

NYVATYAN
SELEX
Yin et al.(2017)
LHX1_eDBD_HT-SELEX
0.867 0.965
LHX5
M04936_2.00
Homo sapiens
NTAATTRS

SYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_HT-SELEX
0.867 0.965
LHX1
M05411_2.00
Homo sapiens
NHRAYGHN

NDCRTYDN
SELEX
Yin et al.(2017)
LHX1_eDBD_Methyl-HT-SELEX
0.867 0.965
LHX5
M04937_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_1
0.867 0.965
LHX5
M04938_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
LHX5_FL_Methyl-HT-SELEX_2
0.867 0.965
Lim1
M03853_2.00
Drosophila melanogaster
NTAATTRN

NYAATTAN
SELEX
Nitta et al.(2015)
Lim1_1
0.851 0.877
Lim1
M06529_2.00
Drosophila melanogaster
TTAATTA

TAATTAA
B1H
Mathelier et al.(2014)
MA0194.1
0.851 0.877
Lim1
M06332_2.00
Drosophila melanogaster
TTAATTA

TAATTAA
B1H
Zhu et al.(2011)
Lim1_Cell_FBgn0026411
0.851 0.877
Lim1
M06333_2.00
Drosophila melanogaster
HTAATTR

YAATTAD
B1H
Zhu et al.(2011)
Lim1_SOLEXA_FBgn0026411
0.851 0.877
Lhx4
M00430_2.00
Mus musculus
NYAATHN

NDATTRN
PBM
Berger et al.(2008)
Lhx4_1719
0.712 0.737
Lhx4
M03257_2.00
Mus musculus
BTAATTRN

NYAATTAV
SELEX
Jolma et al.(2013)
Lhx4_1
0.712 0.737
LHX4
M05063_2.00
Homo sapiens
BYAATYRV

BYRATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_HT-SELEX
0.712 0.737
LHX4
M05066_2.00
Homo sapiens
BTAATTAN

NTAATTAV
SELEX
Yin et al.(2017)
LHX4_FL_HT-SELEX
0.712 0.737
LHX4
M05064_2.00
Homo sapiens
BYAATTRV

BYAATTRV
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_1
0.712 0.737
LHX4
M05065_2.00
Homo sapiens
NTWAYGHN

NDCRTWAN
SELEX
Yin et al.(2017)
LHX4_eDBD_Methyl-HT-SELEX_2
0.712 0.737
LHX4
M05067_2.00
Homo sapiens
NYAATTRN

NYAATTRN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_1
0.712 0.737
LHX4
M05068_2.00
Homo sapiens
NTAAYGHN

NDCRTTAN
SELEX
Yin et al.(2017)
LHX4_FL_Methyl-HT-SELEX_2
0.712 0.737
Lhx3
M00435_2.00
Mus musculus
NNNYAATHW

WDATTRNNN
PBM
Berger et al.(2008)
Lhx3_3431
0.712 0.719
Lhx3
M02687_2.00
Mus musculus
VRWTAATTAATTW

WAATTAATTAWYB
SELEX
Mathelier et al.(2014)
MA0135.1
0.712 0.719
LHX3
M09137_2.00
Homo sapiens
NYTAATTAAWTHH

DDAWTTAATTARN
Misc
Kulakovskiy et al.(2013)
LHX3_HUMAN.H11MO.0.C
0.712 0.719
Lhx3
M09188_2.00
Mus musculus
NYTRATKRV

BYMATYARN
Misc
Kulakovskiy et al.(2013)
LHX3_MOUSE.H11MO.0.C
0.712 0.719
Lhx3
M09570_2.00
Mus musculus
NNBTAATTAV

BTAATTAVNN
Misc
Heinz et al.(2010)
Neuron-Lhx3_GSE31456
0.712 0.719
LHX3
M10657_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3A_01
0.712 0.719
LHX3
M10658_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3b_01
0.712 0.719
LHX3
M10659_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX3_Q3
0.712 0.719
Lim3
M02116_2.00
Drosophila melanogaster
NNNNNATBRN

NYVATNNNNN
PBM
Weirauch et al.(2014)
pTH6478
0.700 0.702
Lim3
M03796_2.00
Drosophila melanogaster
BTAATTAV

BTAATTAV
SELEX
Nitta et al.(2015)
Lim3_1
0.700 0.702
Lim3
M06492_2.00
Drosophila melanogaster
HTAATKA

TMATTAD
B1H
Mathelier et al.(2014)
MA0195.1
0.700 0.702
Lim3
M06258_2.00
Drosophila melanogaster
HHTAATKA

TMATTADD
B1H
Zhu et al.(2011)
Lim3_Cell_FBgn0002023
0.700 0.702
Lim3
M06259_2.00
Drosophila melanogaster
HTRATTR

YAATYAD
B1H
Zhu et al.(2011)
Lim3_SOLEXA_FBgn0002023
0.700 0.702
RAX2
M03214_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
RAXL1_1
0.666 0.491
Q0N4F9_NEMVE
M02162_2.00
Nematostella vectensis
DTAATTAK

MTAATTAH
PBM
Weirauch et al.(2014)
pTH6150
0.662 0.404
Rax
M00426_2.00
Mus musculus
NNTAATTRN

NYAATTANN
PBM
Berger et al.(2008)
Rax_3443
0.662 0.456
Prrx1
M00431_2.00
Mus musculus
TAATTRNN

NNYAATTA
PBM
Berger et al.(2008)
Prrx1_3442
0.662 0.456
Prrx2
M00486_2.00
Mus musculus
WRATNNN

NNNATYW
PBM
Berger et al.(2008)
Prrx2_3072
0.662 0.456
PRRX1
M03120_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_1
0.662 0.456
PRRX1
M03121_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
PRRX1_2
0.662 0.456
PRRX1
M03122_2.00
Homo sapiens
TAATTVRRTTA

TAAYYBAATTA
SELEX
Jolma et al.(2013)
PRRX1_3
0.662 0.456
PRRX2
M03200_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
PRRX2_1
0.662 0.456
RAX
M03149_2.00
Homo sapiens
NHTAATTRNN

NNYAATTADN
SELEX
Jolma et al.(2013)
RAX_1
0.662 0.456
Prrx2
M03277_2.00
Mus musculus
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
Prrx2_1
0.662 0.456
CG9876
M03865_2.00
Drosophila melanogaster
SVTVATBRSN

NSYVATBABS
SELEX
Nitta et al.(2015)
CG9876_1
0.662 0.456
CG9876
M03866_2.00
Drosophila melanogaster
NTAATTRV

BYAATTAN
SELEX
Nitta et al.(2015)
CG9876_2
0.662 0.456
CG9876
M03867_2.00
Drosophila melanogaster
TAATYTAATTA

TAATTARATTA
SELEX
Nitta et al.(2015)
CG9876_3
0.662 0.456
CG9876
M03868_2.00
Drosophila melanogaster
TAATTRVNTAATTR

YAATTANBYAATTA
SELEX
Nitta et al.(2015)
CG9876_4
0.662 0.456
Rx
M03840_2.00
Drosophila melanogaster
BTAATTRV

BYAATTAV
SELEX
Nitta et al.(2015)
Rx_1
0.662 0.456
Rx
M03841_2.00
Drosophila melanogaster
NTAATBNSATTAN

NTAATSNVATTAN
SELEX
Nitta et al.(2015)
Rx_2
0.662 0.456
PRRX2
M05262_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_HT-SELEX
0.662 0.456
RAX
M05142_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
RAX_eDBD_HT-SELEX
0.662 0.456
PRRX2
M05258_2.00
Homo sapiens
NTNAYGHN

NDCRTNAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_1
0.662 0.456
PRRX2
M05259_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_HT-SELEX_2
0.662 0.456
Rx
M06520_2.00
Drosophila melanogaster
YTAATTR

YAATTAR
B1H
Mathelier et al.(2014)
MA0202.1
0.662 0.456
CG9876
M06537_2.00
Drosophila melanogaster
BTAATTR

YAATTAV
B1H
Mathelier et al.(2014)
MA0184.1
0.662 0.456
CG9876
M06350_2.00
Drosophila melanogaster
DBTAATTR

YAATTAVH
B1H
Zhu et al.(2011)
CG9876_Cell_FBgn0034821
0.662 0.456
CG9876
M06351_2.00
Drosophila melanogaster
HTAATTR

YAATTAD
B1H
Zhu et al.(2011)
CG9876_SOLEXA_FBgn0034821
0.662 0.456
Rx
M06317_2.00
Drosophila melanogaster
VYTAATTR

YAATTARB
B1H
Zhu et al.(2011)
Rx_Cell_FBgn0020617
0.662 0.456
Rx
M06318_2.00
Drosophila melanogaster
HTAATTR

YAATTAD
B1H
Zhu et al.(2011)
Rx_SOLEXA_FBgn0020617
0.662 0.456
PRRX2
M09156_2.00
Homo sapiens
HTAATTR

YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_HUMAN.H11MO.0.C
0.662 0.456
Prrx2
M09207_2.00
Mus musculus
HTAATTR

YAATTAD
Misc
Kulakovskiy et al.(2013)
PRRX2_MOUSE.H11MO.0.C
0.662 0.456
Prrx1
M10770_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_01
0.662 0.456
PRRX1
M10675_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PMX1_Q6
0.662 0.456
PRRX2
M10735_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRRX2_05
0.662 0.456
PRRX2
M10776_2.00
Sus scrofa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRX2_Q2
0.662 0.456
Rax
M10773_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RAX_04
0.662 0.456
Prrx2
M10767_2.00
Mus musculus
HNVHTAATTRRNHNDW

WHNDNYYAATTADBND
Transfac
Matys et al.(2006)
V$S8_01
0.662 0.456
PRRX2
M05260_2.00
Homo sapiens
NTAAYGHN

NDCRTTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_1
0.662 0.456
PRRX2
M05261_2.00
Homo sapiens
NTAATYRN

NYRATTAN
SELEX
Yin et al.(2017)
PRRX2_eDBD_Methyl-HT-SELEX_2
0.662 0.456
PRRX2
M05263_2.00
Homo sapiens
NTAATTRR

YYAATTAN
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_1
0.662 0.456
PRRX2
M05264_2.00
Homo sapiens
HTAAYGHN

NDCRTTAD
SELEX
Yin et al.(2017)
PRRX2_FL_Methyl-HT-SELEX_2
0.662 0.456
RAX
M05143_2.00
Homo sapiens
NTAAYRNN

NNYRTTAN
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_1
0.662 0.456
RAX
M05144_2.00
Homo sapiens
YYAATTRN

NYAATTRR
SELEX
Yin et al.(2017)
RAX_eDBD_Methyl-HT-SELEX_2
0.662 0.456
Dlx2
M00423_2.00
Mus musculus
NTAATNDNN

NNHNATTAN
PBM
Berger et al.(2008)
Dlx2_2273
0.662 0.404
Dll
M02112_2.00
Drosophila melanogaster
NVTAATTANN

NNTAATTABN
PBM
Weirauch et al.(2014)
pTH5506
0.662 0.404
DLX2
M03118_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX2_1
0.662 0.404
Dlx2
M03254_2.00
Mus musculus
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
Dlx2_1
0.662 0.404
Dll
M03777_2.00
Drosophila melanogaster
NTAATTRN

NYAATTAN
SELEX
Nitta et al.(2015)
Dll_1
0.662 0.404
Dll
M03778_2.00
Drosophila melanogaster
NTAATTRN

NYAATTAN
SELEX
Nitta et al.(2015)
Dll_2
0.662 0.404
DLX2
M05026_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX2_eDBD_HT-SELEX
0.662 0.404
DLX2
M05028_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX2_FL_HT-SELEX
0.662 0.404
Dll
M06479_2.00
Drosophila melanogaster
TAATTDB

VHAATTA
B1H
Mathelier et al.(2014)
MA0187.1
0.662 0.404
Dll
M06217_2.00
Drosophila melanogaster
TAATTDB

VHAATTA
B1H
Zhu et al.(2011)
Dll_Cell_FBgn0000157
0.662 0.404
Dll
M06218_2.00
Drosophila melanogaster
TAATKR

YMATTA
B1H
Zhu et al.(2011)
Dll_SOLEXA_FBgn0000157
0.662 0.404
DLX2
M10674_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX2_Q6
0.662 0.404
DLX2
M05027_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX2_eDBD_Methyl-HT-SELEX
0.662 0.404
DLX2
M05029_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX2_FL_Methyl-HT-SELEX
0.662 0.404
Dlx3
M00387_2.00
Mus musculus
NTAATDRNN

NNYHATTAN
PBM
Berger et al.(2008)
Dlx3_1030
0.662 0.386
DLX3
M03081_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX3_1
0.662 0.386
DLX3
M04922_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX3_eDBD_HT-SELEX
0.662 0.386
DLX3
M04925_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX3_FL_HT-SELEX
0.662 0.386
DLX3
M09129_2.00
Homo sapiens
RVTAATTRVH

DBYAATTABY
Misc
Kulakovskiy et al.(2013)
DLX3_HUMAN.H11MO.0.C
0.662 0.386
Dlx3
M09172_2.00
Mus musculus
RVTAATTRVH

DBYAATTABY
Misc
Kulakovskiy et al.(2013)
DLX3_MOUSE.H11MO.0.C
0.662 0.386
dlx3.L
M10803_2.00
Xenopus laevis Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_02
0.662 0.386
DLX3
M10638_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_Q3
0.662 0.386
DLX3
M10639_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX3_Q6
0.662 0.386
dlx3.L
M10804_2.00
Xenopus laevis
YAWRTAAAYAWWRY

RYWWTRTTTAYWWR
Transfac
Matys et al.(2006)
V$XFD1_01
0.662 0.386
DLX3
M04923_2.00
Homo sapiens
NTWAYKHB

VDMRTWAN
SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_1
0.662 0.386
DLX3
M04924_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX3_eDBD_Methyl-HT-SELEX_2
0.662 0.386
DLX3
M04926_2.00
Homo sapiens
NTWAYGHB

VDCRTWAN
SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_1
0.662 0.386
DLX3
M04927_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX3_FL_Methyl-HT-SELEX_2
0.662 0.386
MIXL1
M03231_2.00
Homo sapiens
NNTAATTRNN

NNYAATTANN
SELEX
Jolma et al.(2013)
MIXL1_1
0.659 0.526
MIXL1
M05359_2.00
Homo sapiens
TAATBNVATTA

TAATBNVATTA
SELEX
Yin et al.(2017)
MIXL1_FL_HT-SELEX
0.659 0.526
MIXL1
M10747_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MIXL1_02
0.659 0.526
MIXL1
M05360_2.00
Homo sapiens
TAATYNRATTA

TAATYNRATTA
SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_1
0.659 0.526
MIXL1
M05361_2.00
Homo sapiens
TAATYDCRTTA

TAAYGHRATTA
SELEX
Yin et al.(2017)
MIXL1_FL_Methyl-HT-SELEX_2
0.659 0.526
C4B866_NEMVE
M02052_2.00
Nematostella vectensis
NNTTAATTARNN

NNYTAATTAANN
PBM
Weirauch et al.(2014)
pTH6176
0.657 0.561
Sebox
M02097_2.00
Mus musculus
NHTTAATTAN

NTAATTAADN
PBM
Weirauch et al.(2014)
pTH6379
0.656 0.491
Mixl1
M10765_2.00
Mus musculus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MIXL1_03
0.655 0.509
Dlx4
M00409_2.00
Mus musculus
NWAATNDN

NHNATTWN
PBM
Berger et al.(2008)
Dlx4_3488
0.652 0.404
DLX4
M03112_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX4_1
0.652 0.404
DLX4
M05002_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX4_eDBD_HT-SELEX
0.652 0.404
DLX4
M05005_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX4_FL_HT-SELEX
0.652 0.404
DLX4
M05003_2.00
Homo sapiens
NTAAYRAB

VTYRTTAN
SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_1
0.652 0.404
DLX4
M05004_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX4_eDBD_Methyl-HT-SELEX_2
0.652 0.404
DLX4
M05006_2.00
Homo sapiens
NTAAYKAB

VTMRTTAN
SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_1
0.652 0.404
DLX4
M05007_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX4_FL_Methyl-HT-SELEX_2
0.652 0.404
Dlx5
M00449_2.00
Mus musculus
WRATNDN

NHNATYW
PBM
Berger et al.(2008)
Dlx5_3419
0.652 0.386
Dlx1
M00491_2.00
Mus musculus
NTAATNDNN

NNHNATTAN
PBM
Berger et al.(2008)
Dlx1_1741
0.652 0.386
DLX1
M03166_2.00
Homo sapiens
NNTAATTDNN

NNHAATTANN
SELEX
Jolma et al.(2013)
DLX1_1
0.652 0.386
DLX5
M03095_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX5_1
0.652 0.386
DLX6
M03078_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
DLX6_1
0.652 0.386
Dlx1
M03281_2.00
Mus musculus
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
Dlx1_1
0.652 0.386
DLX1
M05176_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX1_eDBD_HT-SELEX
0.652 0.386
DLX1
M05178_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX1_FL_HT-SELEX
0.652 0.386
DLX5
M04953_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX5_eDBD_HT-SELEX
0.652 0.386
DLX5
M04956_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX5_FL_HT-SELEX
0.652 0.386
DLX6
M04905_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX6_eDBD_HT-SELEX
0.652 0.386
Dlx5
M09195_2.00
Mus musculus
WAATTRYWKBB

VVMWRYAATTW
Misc
Kulakovskiy et al.(2013)
DLX5_MOUSE.H11MO.0.C
0.652 0.386
DLX5
M10650_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$DLX5_Q3
0.652 0.386
DLX1
M05177_2.00
Homo sapiens
NTAATTRB

VYAATTAN
SELEX
Yin et al.(2017)
DLX1_eDBD_Methyl-HT-SELEX
0.652 0.386
DLX1
M05179_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX1_FL_Methyl-HT-SELEX
0.652 0.386
DLX5
M04954_2.00
Homo sapiens
NTAAYDAB

VTHRTTAN
SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_1
0.652 0.386
DLX5
M04955_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX5_eDBD_Methyl-HT-SELEX_2
0.652 0.386
DLX5
M04957_2.00
Homo sapiens
NTAAYGHB

VDCRTTAN
SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_1
0.652 0.386
DLX5
M04958_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX5_FL_Methyl-HT-SELEX_2
0.652 0.386
DLX6
M04906_2.00
Homo sapiens
NTAAYKAB

VTMRTTAN
SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_1
0.652 0.386
DLX6
M04907_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
DLX6_eDBD_Methyl-HT-SELEX_2
0.652 0.386
PROP1
M00317_2.00
Homo sapiens
HAAYNNNNNN

NNNNNNRTTD
PBM
Barrera et al.(2016)
PROP1_REF
0.649 0.509
Prop1
M00498_2.00
Mus musculus
NRAKDDN

NHHMTYN
PBM
Berger et al.(2008)
Prop1_3949
0.649 0.509
PROP1
M03216_2.00
Homo sapiens
TAATTHRATTA

TAATYDAATTA
SELEX
Jolma et al.(2013)
PROP1_1
0.649 0.509
PROP1
M03217_2.00
Homo sapiens
TAATKNRRTTA

TAAYYNMATTA
SELEX
Jolma et al.(2013)
PROP1_2
0.649 0.509
PROP1
M05298_2.00
Homo sapiens
WAATTNNRTTD

HAAYNNAATTW
SELEX
Yin et al.(2017)
PROP1_eDBD_HT-SELEX
0.649 0.509
PROP1
M05301_2.00
Homo sapiens
TAATTNVATTA

TAATBNAATTA
SELEX
Yin et al.(2017)
PROP1_FL_HT-SELEX
0.649 0.509
Prop1
M09210_2.00
Mus musculus
TAATKRRATTA

TAATYYMATTA
Misc
Kulakovskiy et al.(2013)
PROP1_MOUSE.H11MO.0.C
0.649 0.509
PROP1
M10777_2.00
Sus scrofa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PROP1_01
0.649 0.509
PROP1
M10737_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PROP1_Q2
0.649 0.509
PROP1
M00315_2.00
Homo sapiens
NNHNATNN

NNATNDNN
PBM
Barrera et al.(2016)
PROP1_R112Q
0.649 0.509
PROP1
M05299_2.00
Homo sapiens
TAATTNVRTTW

WAAYBNAATTA
SELEX
Yin et al.(2017)
PROP1_eDBD_Methyl-HT-SELEX_1
0.649 0.509
PROP1
M05300_2.00
Homo sapiens
TAAYNDCRTTA

TAAYGHNRTTA
SELEX
Yin et al.(2017)
PROP1_eDBD_Methyl-HT-SELEX_2
0.649 0.509
PROP1
M05302_2.00
Homo sapiens
TAATTNVRTTA

TAAYBNAATTA
SELEX
Yin et al.(2017)
PROP1_FL_Methyl-HT-SELEX_1
0.649 0.509
PROP1
M05303_2.00
Homo sapiens
TAATYRVRTTA

TAAYBYRATTA
SELEX
Yin et al.(2017)
PROP1_FL_Methyl-HT-SELEX_2
0.649 0.509
ESX1
M00292_2.00
Homo sapiens
NNTAATNDN

NHNATTANN
PBM
Barrera et al.(2016)
ESX1_REF
0.649 0.439
ESX1
M03137_2.00
Homo sapiens
NNTAATTRNN

NNYAATTANN
SELEX
Jolma et al.(2013)
ESX1_1
0.649 0.439
ESX1
M03138_2.00
Homo sapiens
NNTAATTRNN

NNYAATTANN
SELEX
Jolma et al.(2013)
ESX1_2
0.649 0.439
ESX1
M05087_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
ESX1_eDBD_HT-SELEX
0.649 0.439
ESX1
M05089_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
ESX1_FL_HT-SELEX
0.649 0.439
ESX1
M05088_2.00
Homo sapiens
NTAATTRR

YYAATTAN
SELEX
Yin et al.(2017)
ESX1_eDBD_Methyl-HT-SELEX
0.649 0.439
ESX1
M05090_2.00
Homo sapiens
NTAATTRR

YYAATTAN
SELEX
Yin et al.(2017)
ESX1_FL_Methyl-HT-SELEX
0.649 0.439
Alx3
M00402_2.00
Mus musculus
WAATNDN

NHNATTW
PBM
Berger et al.(2008)
Alx3_3418
0.648 0.491
Alx1
M00471_2.00
Mus musculus
NTAATTRN

NYAATTAN
PBM
Berger et al.(2008)
Cart1_0997
0.648 0.491
Alx1
M00472_2.00
Mus musculus
NTAATDDN

NHHATTAN
PBM
Berger et al.(2008)
Cart1_1275
0.648 0.491
Alx4
M00487_2.00
Mus musculus
NTAATDDN

NHHATTAN
PBM
Berger et al.(2008)
Alx4_1744
0.648 0.491
ALX3
M03172_2.00
Homo sapiens
NNTAATTRNN

NNYAATTANN
SELEX
Jolma et al.(2013)
ALX3_1
0.648 0.491
ALX3
M03173_2.00
Homo sapiens
NNTAATTRNN

NNYAATTANN
SELEX
Jolma et al.(2013)
ALX3_2
0.648 0.491
ALX3
M03174_2.00
Homo sapiens
NTAATYNRATTAN

NTAATYNRATTAN
SELEX
Jolma et al.(2013)
ALX3_3
0.648 0.491
ALX4
M03079_2.00
Homo sapiens
NTAATYNRRTTAN

NTAAYYNRATTAN
SELEX
Jolma et al.(2013)
ALX4_1
0.648 0.491
ALX1
M03226_2.00
Homo sapiens
NTAATTRVRTTAN

NTAAYBYAATTAN
SELEX
Jolma et al.(2013)
CART1_1
0.648 0.491
Alx1
M03272_2.00
Mus musculus
NNTAATTRRD

HYYAATTANN
SELEX
Jolma et al.(2013)
Alx1_1
0.648 0.491
Alx1
M03273_2.00
Mus musculus
NTAATYNRATTAN

NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Alx1_2
0.648 0.491
Alx4
M03278_2.00
Mus musculus
NTAATYNRATTAN

NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Alx4_1
0.648 0.491
ALX1
M05327_2.00
Homo sapiens
TAATYTAATTA

TAATTARATTA
SELEX
Yin et al.(2017)
ALX1_FL_HT-SELEX
0.648 0.491
ALX3
M05195_2.00
Homo sapiens
NTAATTRR

YYAATTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_HT-SELEX
0.648 0.491
ALX3
M05198_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
ALX3_FL_HT-SELEX
0.648 0.491
ALX4
M04917_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
ALX4_eDBD_HT-SELEX
0.648 0.491
ALX1
M09160_2.00
Homo sapiens
VTAATYRVATTA

TAATBYRATTAB
Misc
Kulakovskiy et al.(2013)
ALX1_HUMAN.H11MO.0.B
0.648 0.491
Alx1
M09201_2.00
Mus musculus
VTAATYRVATTA

TAATBYRATTAB
Misc
Kulakovskiy et al.(2013)
ALX1_MOUSE.H11MO.0.B
0.648 0.491
ALX4
M10637_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ALX4_01
0.648 0.491
ALX1
M10741_2.00
Homo sapiens
VVHTAATKNNHATTABYN

NRVTAATDNNMATTADBB
Transfac
Matys et al.(2006)
V$CART1_01
0.648 0.491
ALX1
M05328_2.00
Homo sapiens
TAATYTAATTA

TAATTARATTA
SELEX
Yin et al.(2017)
ALX1_FL_Methyl-HT-SELEX
0.648 0.491
ALX3
M05196_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_1
0.648 0.491
ALX3
M05197_2.00
Homo sapiens
NTAAYBHN

NDVRTTAN
SELEX
Yin et al.(2017)
ALX3_eDBD_Methyl-HT-SELEX_2
0.648 0.491
ALX3
M05199_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_1
0.648 0.491
ALX3
M05200_2.00
Homo sapiens
NTAAYGHN

NDCRTTAN
SELEX
Yin et al.(2017)
ALX3_FL_Methyl-HT-SELEX_2
0.648 0.491
ALX4
M04918_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_1
0.648 0.491
ALX4
M04919_2.00
Homo sapiens
NTWAYGHN

NDCRTWAN
SELEX
Yin et al.(2017)
ALX4_eDBD_Methyl-HT-SELEX_2
0.648 0.491
CG32532
M03874_2.00
Drosophila melanogaster
NTAAYBNVRTTAN

NTAAYBNVRTTAN
SELEX
Nitta et al.(2015)
CG32532_1
0.647 0.509
CG32532
M06547_2.00
Drosophila melanogaster
YTAATTR

YAATTAR
B1H
Mathelier et al.(2014)
MA0179.1
0.647 0.509
CG32532
M06370_2.00
Drosophila melanogaster
YTAATTR

YAATTAR
B1H
Zhu et al.(2011)
CG32532_Cell_FBgn0052532
0.647 0.509
CG32532
M06371_2.00
Drosophila melanogaster
HTAATTR

YAATTAD
B1H
Zhu et al.(2011)
CG32532_SOLEXA_FBgn0052532
0.647 0.509
al
M03776_2.00
Drosophila melanogaster
TAAYBNVRTTA

TAAYBNVRTTA
SELEX
Nitta et al.(2015)
al_1
0.643 0.509
al
M06477_2.00
Drosophila melanogaster
TAATTAA

TTAATTA
B1H
Mathelier et al.(2014)
MA0208.1
0.643 0.509
al
M06212_2.00
Drosophila melanogaster
TAATTAA

TTAATTA
B1H
Zhu et al.(2011)
Al_Cell_FBgn0000061
0.643 0.509
al
M06213_2.00
Drosophila melanogaster
NNYTAATTR

YAATTARNN
B1H
Zhu et al.(2011)
Al_SOLEXA_FBgn0000061
0.643 0.509
CG2808
M03875_2.00
Drosophila melanogaster
TAATYNSRTTA

TAAYSNRATTA
SELEX
Nitta et al.(2015)
CG2808_1
0.642 0.491
DRGX
M03199_2.00
Homo sapiens
NTAATTNRATTAN

NTAATYNAATTAN
SELEX
Jolma et al.(2013)
DRGX_1
0.642 0.474
DRGX
M05253_2.00
Homo sapiens
NTAATTRR

YYAATTAN
SELEX
Yin et al.(2017)
DRGX_eDBD_HT-SELEX
0.642 0.474
Drgx
M10774_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRRXL1_01
0.642 0.474
DRGX
M05254_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
DRGX_eDBD_Methyl-HT-SELEX
0.642 0.474
PROP1
M00316_2.00
Homo sapiens
DTAATTRK

MYAATTAH
PBM
Barrera et al.(2016)
PROP1_R99Q
0.642 0.491
ARX
M00264_2.00
Homo sapiens
NNWRATNNN

NNNATYWNN
PBM
Barrera et al.(2016)
ARX_REF
0.641 0.474
Arx
M00467_2.00
Mus musculus
NTAATTDN

NHAATTAN
PBM
Berger et al.(2008)
Arx_1738
0.641 0.474
ARX
M03076_2.00
Homo sapiens
NTAATYNRATTAN

NTAATYNRATTAN
SELEX
Jolma et al.(2013)
ARX_1
0.641 0.474
Arx
M03269_2.00
Mus musculus
NTAATYNRATTAN

NTAATYNRATTAN
SELEX
Jolma et al.(2013)
Arx_1
0.641 0.474
ARX
M04895_2.00
Homo sapiens
BTAATTRR

YYAATTAV
SELEX
Yin et al.(2017)
ARX_eDBD_HT-SELEX
0.641 0.474
Arx
M10775_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$ARX_05
0.641 0.474
ARX
M04896_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
ARX_eDBD_Methyl-HT-SELEX
0.641 0.474
ARX
M00260_2.00
Homo sapiens
NMTAATTANNN

NNNTAATTAKN
PBM
Barrera et al.(2016)
ARX_L343Q
0.641 0.456
ARX
M00261_2.00
Homo sapiens
NNWRAYNNN

NNNRTYWNN
PBM
Barrera et al.(2016)
ARX_P353L
0.641 0.456
ARX
M00262_2.00
Homo sapiens
ATAATTAT

ATAATTAT
PBM
Barrera et al.(2016)
ARX_P353R
0.641 0.456
PHOX2B
M00282_2.00
Homo sapiens
TAATTRRY

RYYAATTA
PBM
Barrera et al.(2016)
PHOX2B_REF
0.641 0.456
Phox2a
M00400_2.00
Mus musculus
NNHAAYNN

NNRTTDNN
PBM
Berger et al.(2008)
Phox2a_3947
0.641 0.456
Phox2b
M00401_2.00
Mus musculus
NNHAAYNN

NNRTTDNN
PBM
Berger et al.(2008)
Phox2b_3948
0.641 0.456
PHOX2A
M03194_2.00
Homo sapiens
TAATTRVRTTA

TAAYBYAATTA
SELEX
Jolma et al.(2013)
PHOX2A_1
0.641 0.456
PHOX2B
M03113_2.00
Homo sapiens
TAATTRVRTTA

TAAYBYAATTA
SELEX
Jolma et al.(2013)
PHOX2B_1
0.641 0.456
PHOX2B
M03114_2.00
Homo sapiens
TAATTRVRTTA

TAAYBYAATTA
SELEX
Jolma et al.(2013)
PHOX2B_2
0.641 0.456
PHOX2A
M05244_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
PHOX2A_eDBD_HT-SELEX
0.641 0.456
PHOX2B
M05008_2.00
Homo sapiens
BTAATYRV

BYRATTAV
SELEX
Yin et al.(2017)
PHOX2B_eDBD_HT-SELEX
0.641 0.456
PHOX2B
M05010_2.00
Homo sapiens
TAATTWRATTA

TAATYWAATTA
SELEX
Yin et al.(2017)
PHOX2B_FL_HT-SELEX
0.641 0.456
Phox2a
M09564_2.00
Mus musculus
NTAATBNRATTA

TAATYNVATTAN
Misc
Heinz et al.(2010)
Neuron-Phox2a_GSE31456
0.641 0.456
PHOX2B
M00279_2.00
Homo sapiens
NVTAATTRMNN

NNKYAATTABN
PBM
Barrera et al.(2016)
PHOX2B_R100L
0.641 0.456
PHOX2B
M00280_2.00
Homo sapiens
NNNHATAAWTDNN

NNHAWTTATDNNN
PBM
Barrera et al.(2016)
PHOX2B_R141G
0.641 0.456
PHOX2B
M00281_2.00
Homo sapiens
NNNNNNNNRY

RYNNNNNNNN
PBM
Barrera et al.(2016)
PHOX2B_R141Q
0.641 0.456
PHOX2A
M05245_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
PHOX2A_eDBD_Methyl-HT-SELEX
0.641 0.456
PHOX2B
M05009_2.00
Homo sapiens
BTAATYRN

NYRATTAV
SELEX
Yin et al.(2017)
PHOX2B_eDBD_Methyl-HT-SELEX
0.641 0.456
PHOX2B
M05011_2.00
Homo sapiens
TAATTHRATTA

TAATYDAATTA
SELEX
Yin et al.(2017)
PHOX2B_FL_Methyl-HT-SELEX
0.641 0.456
hbn
M03813_2.00
Drosophila melanogaster
HTAATYTAATTAD

HTAATTARATTAD
SELEX
Nitta et al.(2015)
hbn_1
0.640 0.456
Pph13
M03845_2.00
Drosophila melanogaster
NTAATTRN

NYAATTAN
SELEX
Nitta et al.(2015)
Pph13_1
0.640 0.456
hbn
M06506_2.00
Drosophila melanogaster
TTAATTR

YAATTAA
B1H
Mathelier et al.(2014)
MA0226.1
0.640 0.456
Pph13
M06522_2.00
Drosophila melanogaster
NTAATTR

YAATTAN
B1H
Mathelier et al.(2014)
MA0200.1
0.640 0.456
hbn
M06291_2.00
Drosophila melanogaster
TWAWTTR

YAAWTWA
B1H
Zhu et al.(2011)
Hbn_Cell_FBgn0008636
0.640 0.456
hbn
M06292_2.00
Drosophila melanogaster
NHTAATTR

YAATTADN
B1H
Zhu et al.(2011)
Hbn_SOLEXA_FBgn0008636
0.640 0.456
Pph13
M06321_2.00
Drosophila melanogaster
NHTAATTR

YAATTADN
B1H
Zhu et al.(2011)
Pph13_Cell_FBgn0023489
0.640 0.456
Pph13
M06322_2.00
Drosophila melanogaster
YTAATTR

YAATTAR
B1H
Zhu et al.(2011)
Pph13_SOLEXA_FBgn0023489
0.640 0.456
Vsx1
M00459_2.00
Mus musculus
NNTAATDDN

NHHATTANN
PBM
Berger et al.(2008)
Vsx1_1728
0.638 0.509
Vsx1
M03267_2.00
Mus musculus
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
Vsx1_1
0.638 0.509
VSX1
M00269_2.00
Homo sapiens
NNWAAYNNN

NNNRTTWNN
PBM
Barrera et al.(2016)
VSX1_REF
0.638 0.491
VSX1
M00266_2.00
Homo sapiens
NNTAAYNNN

NNNRTTANN
PBM
Barrera et al.(2016)
VSX1_G160D
0.638 0.491
VSX1
M00268_2.00
Homo sapiens
NNWRAYNNN

NNNRTYWNN
PBM
Barrera et al.(2016)
VSX1_R166Q
0.638 0.491
Q9BJW6_9CNID
M02215_2.00
Sarsia sp. Long Island Sound
NBTAATTAVN

NBTAATTAVN
PBM
Weirauch et al.(2014)
pTH6287
0.638 0.404
CG11294
M03855_2.00
Drosophila melanogaster
TAATTVVATTA

TAATBBAATTA
SELEX
Nitta et al.(2015)
CG11294_1
0.635 0.421
CG11294
M03856_2.00
Drosophila melanogaster
TAATTDVATTA

TAATBHAATTA
SELEX
Nitta et al.(2015)
CG11294_2
0.635 0.421
PHDP
M03849_2.00
Drosophila melanogaster
NTAATKNVATTAN

NTAATBNMATTAN
SELEX
Nitta et al.(2015)
PHDP_1
0.635 0.421
PHDP
M06525_2.00
Drosophila melanogaster
HTAATTD

HAATTAD
B1H
Mathelier et al.(2014)
MA0457.1
0.635 0.421
CG11294
M06531_2.00
Drosophila melanogaster
TAATTAA

TTAATTA
B1H
Mathelier et al.(2014)
MA0172.1
0.635 0.421
CG11294
M06337_2.00
Drosophila melanogaster
TAATTAA

TTAATTA
B1H
Zhu et al.(2011)
CG11294_Cell_FBgn0030058
0.635 0.421
CG11294
M06338_2.00
Drosophila melanogaster
HTAATTR

YAATTAD
B1H
Zhu et al.(2011)
CG11294_SOLEXA_FBgn0030058
0.635 0.421
PHDP
M06325_2.00
Drosophila melanogaster
HTAATT

AATTAD
B1H
Zhu et al.(2011)
PhdP_Cell_FBgn0025334
0.635 0.421
PHDP
M06326_2.00
Drosophila melanogaster
YTAATT

AATTAR
B1H
Zhu et al.(2011)
PhdP_SOLEXA_FBgn0025334
0.635 0.421
VSX2
M00287_2.00
Homo sapiens
NYTAATTARN

NYTAATTARN
PBM
Barrera et al.(2016)
VSX2_REF
0.635 0.474
VSX2
M03124_2.00
Homo sapiens
YTAATTAN

NTAATTAR
SELEX
Jolma et al.(2013)
VSX2_1
0.635 0.474
VSX2
M05036_2.00
Homo sapiens
CTAATTAN

NTAATTAG
SELEX
Yin et al.(2017)
VSX2_eDBD_HT-SELEX
0.635 0.474
VSX2
M05039_2.00
Homo sapiens
GCYAATYWY

RWRATTRGC
SELEX
Yin et al.(2017)
VSX2_FL_HT-SELEX
0.635 0.474
Vsx2
M09180_2.00
Mus musculus
NNRGCTAATTAR

YTAATTAGCYNN
Misc
Kulakovskiy et al.(2013)
VSX2_MOUSE.H11MO.0.C
0.635 0.474
VSX2
M10676_2.00
Homo sapiens
HNNGCTAATTANBN

NVNTAATTAGCNND
Transfac
Matys et al.(2006)
V$CHX10_01
0.635 0.474
VSX2
M05037_2.00
Homo sapiens
VYAATTRR

YYAATTRB
SELEX
Yin et al.(2017)
VSX2_eDBD_Methyl-HT-SELEX_1
0.635 0.474
VSX2
M05038_2.00
Homo sapiens
NTAAYKHN

NDMRTTAN
SELEX
Yin et al.(2017)
VSX2_eDBD_Methyl-HT-SELEX_2
0.635 0.474
VSX2
M05040_2.00
Homo sapiens
NTAAYKVN

NBMRTTAN
SELEX
Yin et al.(2017)
VSX2_FL_Methyl-HT-SELEX_1
0.635 0.474
VSX2
M05041_2.00
Homo sapiens
GCYAATYWY

RWRATTRGC
SELEX
Yin et al.(2017)
VSX2_FL_Methyl-HT-SELEX_2
0.635 0.474
VSX2
M00285_2.00
Homo sapiens
NDTWTATTHNNN

NNNDAATAWAHN
PBM
Barrera et al.(2016)
VSX2_R200P
0.635 0.456
VSX2
M00286_2.00
Homo sapiens
YRWKWNN

NNWMWYR
PBM
Barrera et al.(2016)
VSX2_R200Q
0.635 0.456
Vsx2
M02130_2.00
Drosophila melanogaster
TTAATTAB

VTAATTAA
PBM
Weirauch et al.(2014)
pTH6195
0.633 0.456
Vsx2
M03880_2.00
Drosophila melanogaster
NTAATTRN

NYAATTAN
SELEX
Nitta et al.(2015)
Vsx2_1
0.633 0.456
Vsx2
M03881_2.00
Drosophila melanogaster
HRAYNVNNTRATKD

HMATYANNBNRTYD
SELEX
Nitta et al.(2015)
Vsx2_2
0.633 0.456
Vsx2
M06553_2.00
Drosophila melanogaster
KTTAATTAG

CTAATTAAM
B1H
Mathelier et al.(2014)
MA0180.1
0.633 0.456
Vsx2
M06382_2.00
Drosophila melanogaster
KTTAATTAG

CTAATTAAM
B1H
Zhu et al.(2011)
CG33980_Cell_FBgn0053980
0.633 0.456
Vsx2
M06383_2.00
Drosophila melanogaster
NNTAATTRRN

NYYAATTANN
B1H
Zhu et al.(2011)
CG33980_SOLEXA_2_0_FBgn0053980
0.633 0.456
Vsx2
M06384_2.00
Drosophila melanogaster
NNTAATKDN

NHMATTANN
B1H
Zhu et al.(2011)
CG33980_SOLEXA_2_10_FBgn0053980
0.633 0.456
Vsx2
M06385_2.00
Drosophila melanogaster
NHTAATTR

YAATTADN
B1H
Zhu et al.(2011)
CG33980_SOLEXA_FBgn0053980
0.633 0.456
ceh-23
M00671_2.00
Caenorhabditis elegans
HTAATTRNNN

NNNYAATTAD
PBM
Narasimhan et al.(2015)
pTH9478
0.631 0.386
mixl1.S
M02233_2.00
Xenopus laevis
NHTAATTAANN

NNTTAATTADN
PBM
Weirauch et al.(2014)
pTH6163
0.629 0.439
Uncx
M00443_2.00
Mus musculus
NTAATNDN

NHNATTAN
PBM
Berger et al.(2008)
Uncx4
0.628 0.439
uncx
M02111_2.00
Tetraodon nigroviridis
NNTAATTRN

NYAATTANN
PBM
Weirauch et al.(2014)
pTH5474
0.628 0.439
UNCX
M03191_2.00
Homo sapiens
NWAATTVVRTHWN

NWDAYBBAATTWN
SELEX
Jolma et al.(2013)
UNCX_1
0.628 0.439
UNCX
M03192_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
UNCX_2
0.628 0.439
Uncx
M03264_2.00
Mus musculus
NTAATTVRATTAN

NTAATYBAATTAN
SELEX
Jolma et al.(2013)
Uncx_1
0.628 0.439
Uncx
M03265_2.00
Mus musculus
NTAATTRR

YYAATTAN
SELEX
Jolma et al.(2013)
Uncx_2
0.628 0.439
UNCX
M05240_2.00
Homo sapiens
NYAATTRV

BYAATTRN
SELEX
Yin et al.(2017)
UNCX_eDBD_HT-SELEX
0.628 0.439
UNCX
M05241_2.00
Homo sapiens
NYRRYKNN

NNMRYYRN
SELEX
Yin et al.(2017)
UNCX_eDBD_Methyl-HT-SELEX
0.628 0.439
SHOX
M02095_2.00
Homo sapiens
NTAATTRN

NYAATTAN
PBM
Weirauch et al.(2014)
pTH5805
0.627 0.421
Shox2
M00439_2.00
Mus musculus
NTAATDDN

NHHATTAN
PBM
Berger et al.(2008)
Shox2_2641
0.627 0.421
SHOX
M03232_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
SHOX_1
0.627 0.421
SHOX2
M03204_2.00
Homo sapiens
BTAATTRN

NYAATTAV
SELEX
Jolma et al.(2013)
SHOX2_1
0.627 0.421
Shox2
M03263_2.00
Mus musculus
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
Shox2_1
0.627 0.421
CG5369
M03876_2.00
Drosophila melanogaster
TAATTHVATTA

TAATBDAATTA
SELEX
Nitta et al.(2015)
CG5369_1
0.627 0.421
CG5369
M03877_2.00
Drosophila melanogaster
TAATTRNNTAATBN

NVATTANNYAATTA
SELEX
Nitta et al.(2015)
CG5369_2
0.627 0.421
CG5369
M03878_2.00
Drosophila melanogaster
TAATTVRATWA

TWATYBAATTA
SELEX
Nitta et al.(2015)
CG5369_3
0.627 0.421
SHOX
M05366_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_HT-SELEX
0.627 0.421
Shox2
M10772_2.00
Rattus norvegicus Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$SHOX2_05
0.627 0.421
SHOX
M05367_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_1
0.627 0.421
SHOX
M05368_2.00
Homo sapiens
NTAAYGAN

NTCRTTAN
SELEX
Yin et al.(2017)
SHOX_eDBD_Methyl-HT-SELEX_2
0.627 0.421
VSX1
M00267_2.00
Homo sapiens
NNHAAYNNN

NNNRTTDNN
PBM
Barrera et al.(2016)
VSX1_Q175H
0.626 0.474
eve
M00556_2.00
Drosophila melanogaster
NNTAATTARN

NYTAATTANN
PBM
Busser et al.(2012a)
Eve
0.625 0.404
eve
M02115_2.00
Drosophila melanogaster
NTAATNDNN

NNHNATTAN
PBM
Weirauch et al.(2014)
pTH6436
0.625 0.404
eve
M03794_2.00
Drosophila melanogaster
VYTAATKASN

NSTMATTARB
SELEX
Nitta et al.(2015)
eve_1
0.625 0.404
eve
M06486_2.00
Drosophila melanogaster
YTAATKA

TMATTAR
B1H
Mathelier et al.(2014)
MA0221.1
0.625 0.404
eve
M06240_2.00
Drosophila melanogaster
DYTAATKA

TMATTARH
B1H
Zhu et al.(2011)
Eve_Cell_FBgn0000606
0.625 0.404
eve
M06241_2.00
Drosophila melanogaster
HKBTAAYNDTKY

RMAHNRTTAVMD
B1H
Zhu et al.(2011)
eve_FlyReg_FBgn0000606
0.625 0.404
eve
M06242_2.00
Drosophila melanogaster
NYTAATKA

TMATTARN
B1H
Zhu et al.(2011)
Eve_SOLEXA_FBgn0000606
0.625 0.404
eve
M09678_2.00
Drosophila melanogaster
NKHTAATKD

HMATTADMN
Misc
Kulakovskiy et al.(2009)
eve
0.625 0.404
eve
M10786_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$EVE_Q6
0.625 0.404
vsx2
M02079_2.00
Danio rerio
NNYTAATTARN

NYTAATTARNN
PBM
Weirauch et al.(2014)
pTH6221
0.623 0.456
Meox1
M00384_2.00
Mus musculus
NTRATKRNN

NNYMATYAN
PBM
Berger et al.(2008)
Meox1_2310
0.621 0.404
MEOX1
M03077_2.00
Homo sapiens
NNTAATTASN

NSTAATTANN
SELEX
Jolma et al.(2013)
MEOX1_1
0.621 0.404
MEOX1
M04901_2.00
Homo sapiens
NTDAYGHB

VDCRTHAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_1
0.621 0.404
MEOX1
M04902_2.00
Homo sapiens
NTMATKRN

NYMATKAN
SELEX
Yin et al.(2017)
MEOX1_FL_HT-SELEX_2
0.621 0.404
MEOX1
M04903_2.00
Homo sapiens
NTAAYGWB

VWCRTTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_1
0.621 0.404
MEOX1
M04904_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
MEOX1_FL_Methyl-HT-SELEX_2
0.621 0.404
HOXA2
M02083_2.00
Homo sapiens
NNNDHHNNN

NNNDDHNNN
PBM
Weirauch et al.(2014)
pTH5887
0.621 0.386
Hoxa2
M00403_2.00
Mus musculus
NTAATKRNN

NNYMATTAN
PBM
Berger et al.(2008)
Hoxa2_3079
0.621 0.386
HOXA2
M03097_2.00
Homo sapiens
NBTAATKRNN

NNYMATTAVN
SELEX
Jolma et al.(2013)
HOXA2_1
0.621 0.386
HOXB2
M03213_2.00
Homo sapiens
NNTAATKRNN

NNYMATTANN
SELEX
Jolma et al.(2013)
HOXB2_1
0.621 0.386
Hoxa2
M03251_2.00
Mus musculus
NNTAATKRNN

NNYMATTANN
SELEX
Jolma et al.(2013)
Hoxa2_1
0.621 0.386
btn
M03832_2.00
Drosophila melanogaster
NNTAATKANB

VNTMATTANN
SELEX
Nitta et al.(2015)
btn_1
0.621 0.386
btn
M03833_2.00
Drosophila melanogaster
VNTAATKABN

NVTMATTANB
SELEX
Nitta et al.(2015)
btn_2
0.621 0.386
pb
M03872_2.00
Drosophila melanogaster
NTRAYKRY

RYMRTYAN
SELEX
Nitta et al.(2015)
pb_1
0.621 0.386
HOXA2
M04962_2.00
Homo sapiens
NTAATKRV

BYMATTAN
SELEX
Yin et al.(2017)
HOXA2_eDBD_HT-SELEX
0.621 0.386
HOXA2
M04965_2.00
Homo sapiens
NTAATKAB

VTMATTAN
SELEX
Yin et al.(2017)
HOXA2_FL_HT-SELEX
0.621 0.386
HOXB2
M05292_2.00
Homo sapiens
BTAATKRV

BYMATTAV
SELEX
Yin et al.(2017)
HOXB2_eDBD_HT-SELEX
0.621 0.386
btn
M06515_2.00
Drosophila melanogaster
DTAATKA

TMATTAH
B1H
Mathelier et al.(2014)
MA0215.1
0.621 0.386
pb
M06545_2.00
Drosophila melanogaster
YTAATKA

TMATTAR
B1H
Mathelier et al.(2014)
MA0238.1
0.621 0.386
btn
M06307_2.00
Drosophila melanogaster
NDTAATKA

TMATTAHN
B1H
Zhu et al.(2011)
Btn_Cell_FBgn0014949
0.621 0.386
btn
M06308_2.00
Drosophila melanogaster
HTAATKA

TMATTAD
B1H
Zhu et al.(2011)
Btn_SOLEXA_FBgn0014949
0.621 0.386
pb
M06366_2.00
Drosophila melanogaster
BYTAATKA

TMATTARV
B1H
Zhu et al.(2011)
Pb_Cell_FBgn0051481
0.621 0.386
pb
M06367_2.00
Drosophila melanogaster
YTAATKA

TMATTAR
B1H
Zhu et al.(2011)
Pb_SOLEXA_FBgn0051481
0.621 0.386
Hoxa2
M09566_2.00
Mus musculus
DTGATKGATKDB

VHMATCMATCAH
Misc
Heinz et al.(2010)
mES-Hoxa2_Donaldson_et_al.
0.621 0.386
HOXA2
M04963_2.00
Homo sapiens
NTAATTAN

NTAATTAN
SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_1
0.621 0.386
HOXA2
M04964_2.00
Homo sapiens
HTAAYGAB

VTCRTTAD
SELEX
Yin et al.(2017)
HOXA2_eDBD_Methyl-HT-SELEX_2
0.621 0.386
HOXA2
M04966_2.00
Homo sapiens
NTAATKAB

VTMATTAN
SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_1
0.621 0.386
HOXA2
M04967_2.00
Homo sapiens
HTAAYGAB

VTCRTTAD
SELEX
Yin et al.(2017)
HOXA2_FL_Methyl-HT-SELEX_2
0.621 0.386
HOXB2
M05293_2.00
Homo sapiens
NTAATKRN

NYMATTAN
SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_1
0.621 0.386
HOXB2
M05294_2.00
Homo sapiens
HTAAYGAB

VTCRTTAD
SELEX
Yin et al.(2017)
HOXB2_eDBD_Methyl-HT-SELEX_2
0.621 0.386
Vsx1
M02129_2.00
Drosophila melanogaster
VTTAATTRR

YYAATTAAB
PBM
Weirauch et al.(2014)
pTH5821
0.620 0.456
Vsx1
M03879_2.00
Drosophila melanogaster
NTAATTRV

BYAATTAN
SELEX
Nitta et al.(2015)
Vsx1_1
0.620 0.456
Vsx1
M06552_2.00
Drosophila melanogaster
YTAATTR

YAATTAR
B1H
Mathelier et al.(2014)
MA0181.1
0.620 0.456
Vsx1
M06380_2.00
Drosophila melanogaster
YTAATTR

YAATTAR
B1H
Zhu et al.(2011)
CG4136_Cell_FBgn0029775
0.620 0.456
Vsx1
M06381_2.00
Drosophila melanogaster
HTAATTR

YAATTAD
B1H
Zhu et al.(2011)
CG4136_SOLEXA_FBgn0029775
0.620 0.456
repo
M03826_2.00
Drosophila melanogaster
VTTAATTARB

VYTAATTAAB
SELEX
Nitta et al.(2015)
repo_1
0.619 0.474
repo
M03827_2.00
Drosophila melanogaster
VKYAATTRRN

NYYAATTRMB
SELEX
Nitta et al.(2015)
repo_2
0.619 0.474
repo
M03828_2.00
Drosophila melanogaster
VBYAATTRVNNBYAATTRVB

VBYAATTRVNNBYAATTRVB
SELEX
Nitta et al.(2015)
repo_3
0.619 0.474
repo
M06511_2.00
Drosophila melanogaster
TTAATTA

TAATTAA
B1H
Mathelier et al.(2014)
MA0240.1
0.619 0.474
repo
M06301_2.00
Drosophila melanogaster
DTTAATTA

TAATTAAH
B1H
Zhu et al.(2011)
Repo_Cell_FBgn0011701
0.619 0.474
repo
M06302_2.00
Drosophila melanogaster
YTAATTR

YAATTAR
B1H
Zhu et al.(2011)
Repo_SOLEXA_FBgn0011701
0.619 0.474
KLLA0_D10043g
M02140_2.00
Kluyveromyces lactis
NNNNWWNNNN

NNNNWWNNNN
PBM
Weirauch et al.(2014)
pTH6070
0.616 0.386
ISX
M00319_2.00
Homo sapiens
DTAATTRK

MYAATTAH
PBM
Barrera et al.(2016)
ISX_REF
0.612 0.456
ISX
M03218_2.00
Homo sapiens
NTAATTARATTAN

NTAATYTAATTAN
SELEX
Jolma et al.(2013)
ISX_1
0.612 0.456
ISX
M03219_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Jolma et al.(2013)
ISX_2
0.612 0.456
ISX
M03220_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
ISX_3
0.612 0.456
ISX
M05304_2.00
Homo sapiens
BTAATTRG

CYAATTAV
SELEX
Yin et al.(2017)
ISX_eDBD_HT-SELEX
0.612 0.456
ISX
M05307_2.00
Homo sapiens
YTAATTRS

SYAATTAR
SELEX
Yin et al.(2017)
ISX_FL_HT-SELEX
0.612 0.456
ISX
M05305_2.00
Homo sapiens
NTAATTAG

CTAATTAN
SELEX
Yin et al.(2017)
ISX_eDBD_Methyl-HT-SELEX_1
0.612 0.456
ISX
M05306_2.00
Homo sapiens
HTAAYGHN

NDCRTTAD
SELEX
Yin et al.(2017)
ISX_eDBD_Methyl-HT-SELEX_2
0.612 0.456
ISX
M05308_2.00
Homo sapiens
YTAATTRS

SYAATTAR
SELEX
Yin et al.(2017)
ISX_FL_Methyl-HT-SELEX_1
0.612 0.456
ISX
M05309_2.00
Homo sapiens
HTAAYGHN

NDCRTTAD
SELEX
Yin et al.(2017)
ISX_FL_Methyl-HT-SELEX_2
0.612 0.456
Isx
M00452_2.00
Mus musculus
NNHDATNN

NNATHDNN
PBM
Berger et al.(2008)
Isx_3445
0.612 0.421
Mnx1
M00388_2.00
Mus musculus
NTAATBDNNN

NNNHVATTAN
PBM
Berger et al.(2008)
Hlxb9_3422
0.611 0.351
MNX1
M03143_2.00
Homo sapiens
NHTAATTRNH

DNYAATTADN
SELEX
Jolma et al.(2013)
MNX1_1
0.611 0.351
exex
M03871_2.00
Drosophila melanogaster
NNNNYAATTNNYDN

NHRNNAATTRNNNN
SELEX
Nitta et al.(2015)
exex_1
0.611 0.351
MNX1
M05126_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MNX1_eDBD_HT-SELEX
0.611 0.351
exex
M06544_2.00
Drosophila melanogaster
BTAATTA

TAATTAV
B1H
Mathelier et al.(2014)
MA0224.1
0.611 0.351
exex
M06364_2.00
Drosophila melanogaster
TAATTAV

BTAATTA
B1H
Zhu et al.(2011)
Exex_Cell_FBgn0041156
0.611 0.351
exex
M06365_2.00
Drosophila melanogaster
TAATBR

YVATTA
B1H
Zhu et al.(2011)
Exex_SOLEXA_FBgn0041156
0.611 0.351
MNX1
M05127_2.00
Homo sapiens
HTAAYGHB

VDCRTTAD
SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_1
0.611 0.351
MNX1
M05128_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MNX1_eDBD_Methyl-HT-SELEX_2
0.611 0.351
ceh-51
M00678_2.00
Caenorhabditis elegans
NNDAKDRNN

NNYHMTHNN
PBM
Narasimhan et al.(2015)
pTH9353
0.609 0.386
LHX2
M02085_2.00
Homo sapiens
NNNYAAHDDN

NHHDTTRNNN
PBM
Weirauch et al.(2014)
pTH5812
0.608 0.491
Lhx2
M00380_2.00
Mus musculus
NTAATKRN

NYMATTAN
PBM
Berger et al.(2008)
Lhx2_0953
0.608 0.491
Lhx9
M00406_2.00
Mus musculus
NTAATDRN

NYHATTAN
PBM
Berger et al.(2008)
Lhx9_3492
0.608 0.491
LHX2
M03106_2.00
Homo sapiens
NNTAATTAGN

NCTAATTANN
SELEX
Jolma et al.(2013)
LHX2_1
0.608 0.491
LHX2
M03107_2.00
Homo sapiens
YAATTANVCTAATTR

YAATTAGBNTAATTR
SELEX
Jolma et al.(2013)
LHX2_2
0.608 0.491
LHX9
M03163_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
LHX9_1
0.608 0.491
LHX9
M03164_2.00
Homo sapiens
TAATTRGYMATTA

TAATKRCYAATTA
SELEX
Jolma et al.(2013)
LHX9_2
0.608 0.491
LHX9
M05170_2.00
Homo sapiens
YTAATTRG

CYAATTAR
SELEX
Yin et al.(2017)
LHX9_eDBD_HT-SELEX
0.608 0.491
LHX9
M05173_2.00
Homo sapiens
NTAATTRG

CYAATTAN
SELEX
Yin et al.(2017)
LHX9_FL_HT-SELEX
0.608 0.491
LHX2
M09136_2.00
Homo sapiens
NBYTAATTRVNB

VNBYAATTARVN
Misc
Kulakovskiy et al.(2013)
LHX2_HUMAN.H11MO.0.A
0.608 0.491
Lhx2
M09169_2.00
Mus musculus
NNTAATKRGN

NCYMATTANN
Misc
Kulakovskiy et al.(2013)
LHX2_MOUSE.H11MO.0.A
0.608 0.491
Lhx2
M09562_2.00
Mus musculus
NYTAATTA

TAATTARN
Misc
Heinz et al.(2010)
HFSC-Lhx2_GSE48068
0.608 0.491
LHX2
M10655_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX2_Q4
0.608 0.491
LHX2
M10656_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$LHX2_Q6
0.608 0.491
LHX9
M05171_2.00
Homo sapiens
YTAATTRS

SYAATTAR
SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_1
0.608 0.491
LHX9
M05172_2.00
Homo sapiens
HTAACGAB

VTCGTTAD
SELEX
Yin et al.(2017)
LHX9_eDBD_Methyl-HT-SELEX_2
0.608 0.491
LHX9
M05174_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_1
0.608 0.491
LHX9
M05175_2.00
Homo sapiens
HTAACGAB

VTCGTTAD
SELEX
Yin et al.(2017)
LHX9_FL_Methyl-HT-SELEX_2
0.608 0.491
Smp_158000
M02170_2.00
Schistosoma mansoni
TTAATTRG

CYAATTAA
PBM
Weirauch et al.(2014)
pTH5672
0.608 0.386
PHOX2B
M00278_2.00
Homo sapiens
NNNNNRY

RYNNNNN
PBM
Barrera et al.(2016)
PHOX2B_Q143R
0.608 0.439
ap
M06478_2.00
Drosophila melanogaster
YTAATKA

TMATTAR
B1H
Mathelier et al.(2014)
MA0209.1
0.607 0.474
ap
M06214_2.00
Drosophila melanogaster
VYTAATKA

TMATTARB
B1H
Zhu et al.(2011)
Ap_Cell_FBgn0000099
0.607 0.474
ap
M06215_2.00
Drosophila melanogaster
BAATHA

TDATTV
B1H
Zhu et al.(2011)
ap_FlyReg_FBgn0000099
0.607 0.474
ap
M06216_2.00
Drosophila melanogaster
HTAATKR

YMATTAD
B1H
Zhu et al.(2011)
Ap_SOLEXA_FBgn0000099
0.607 0.474
ap
M10781_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$AP_Q6
0.607 0.474
zfhx4
M02108_2.00
Tetraodon nigroviridis
NNTAATTRN

NYAATTANN
PBM
Weirauch et al.(2014)
pTH5654
0.605 0.439
P79681_ACIBE
M02200_2.00
Acipenser baerii
DTAATTRB

VYAATTAH
PBM
Weirauch et al.(2014)
pTH6156
0.601 0.439
MSX2
M00290_2.00
Homo sapiens
WDATNDNN

NNHNATHW
PBM
Barrera et al.(2016)
MSX2_REF
0.600 0.316
Msx2
M00414_2.00
Mus musculus
HRATKRNN

NNYMATYD
PBM
Berger et al.(2008)
Msx2_3449
0.600 0.316
Msx3
M00429_2.00
Mus musculus
TAATKDNN

NNHMATTA
PBM
Berger et al.(2008)
Msx3_3206
0.600 0.316
Msx1
M00501_2.00
Mus musculus
NHDATND

HNATHDN
PBM
Berger et al.(2008)
Msx1_3031
0.600 0.316
Dr
M00555_2.00
Drosophila melanogaster
TAATTRNN

NNYAATTA
PBM
Busser et al.(2012a)
Msh
0.600 0.316
MSX1
M03184_2.00
Homo sapiens
TAATTRBHHNHTAATTRN

NYAATTADNDDVYAATTA
SELEX
Jolma et al.(2013)
MSX1_1
0.600 0.316
MSX1
M03185_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
MSX1_2
0.600 0.316
MSX1
M03186_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
MSX1_3
0.600 0.316
MSX2
M03127_2.00
Homo sapiens
TAATTRBHWKWTAATTGV

BCAATTAWMWDVYAATTA
SELEX
Jolma et al.(2013)
MSX2_1
0.600 0.316
MSX2
M03128_2.00
Homo sapiens
NTAATTGB

VCAATTAN
SELEX
Jolma et al.(2013)
MSX2_2
0.600 0.316
Msx3
M03255_2.00
Mus musculus
TAATTGSHHNNTAATTRN

NYAATTANNDDSCAATTA
SELEX
Jolma et al.(2013)
Msx3_1
0.600 0.316
Msx3
M03256_2.00
Mus musculus
NTAATTRN

NYAATTAN
SELEX
Jolma et al.(2013)
Msx3_2
0.600 0.316
MSX1
M05221_2.00
Homo sapiens
NTAATTRV

BYAATTAN
SELEX
Yin et al.(2017)
MSX1_eDBD_HT-SELEX
0.600 0.316
MSX1
M05224_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX1_FL_HT-SELEX
0.600 0.316
MSX2
M05060_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX2_eDBD_HT-SELEX
0.600 0.316
Dr
M06482_2.00
Drosophila melanogaster
TAATTGS

SCAATTA
B1H
Mathelier et al.(2014)
MA0188.1
0.600 0.316
Dr
M06229_2.00
Drosophila melanogaster
TAATTGSHB

VDSCAATTA
B1H
Zhu et al.(2011)
Dr_Cell_FBgn0000492
0.600 0.316
Dr
M06230_2.00
Drosophila melanogaster
TAATTR

YAATTA
B1H
Zhu et al.(2011)
Dr_SOLEXA_FBgn0000492
0.600 0.316
MSX1
M10715_2.00
Homo sapiens
HNBTWWNTG

CANWWAVND
Transfac
Matys et al.(2006)
V$MSX1_01
0.600 0.316
MSX1
M10716_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX1_Q5_01
0.600 0.316
MSX1
M10717_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX1_Q5
0.600 0.316
MSX2
M10677_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX2_Q3
0.600 0.316
MSX2
M10678_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$MSX2_Q6
0.600 0.316
MSX2
M00288_2.00
Homo sapiens
NTAATNDN

NHNATTAN
PBM
Barrera et al.(2016)
MSX2_P148H
0.600 0.316
MSX1
M05222_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_1
0.600 0.316
MSX1
M05223_2.00
Homo sapiens
NTWAYGMB

VKCRTWAN
SELEX
Yin et al.(2017)
MSX1_eDBD_Methyl-HT-SELEX_2
0.600 0.316
MSX1
M05225_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_1
0.600 0.316
MSX1
M05226_2.00
Homo sapiens
NTWAYGWB

VWCRTWAN
SELEX
Yin et al.(2017)
MSX1_FL_Methyl-HT-SELEX_2
0.600 0.316
MSX2
M05061_2.00
Homo sapiens
NTAATTRN

NYAATTAN
SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_1
0.600 0.316
MSX2
M05062_2.00
Homo sapiens
NTAAYGAB

VTCRTTAN
SELEX
Yin et al.(2017)
MSX2_eDBD_Methyl-HT-SELEX_2
0.600 0.316
unc-4
M03846_2.00
Drosophila melanogaster
TAATTNAATTA

TAATTNAATTA
SELEX
Nitta et al.(2015)
unc-4_1
0.600 0.439
unc-4
M06523_2.00
Drosophila melanogaster
YTAATTR

YAATTAR
B1H
Mathelier et al.(2014)
MA0250.1
0.600 0.439
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE23969 Homeodomain 252 308

Links

Other Homeodomain family TFs
Other Caenorhabditis remanei TFs

4107 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
A1O1_01165 Capronia coronata A1O1_01165 I
A1O3_08745 Capronia epimyces A1O3_08745 I
A1O5_00463 Cladophialophora psammophila A1O5_00463 I
A1O7_01320 Cladophialophora yegresii A1O7_01320 I
A1O9_00176 Exophiala aquamarina A1O9_00176 I
AACERI_AaceriADR249W Saccharomycetaceae sp ashbya aceri AACERI_AaceriADR249W N
AB00812.1 Alternaria brassicicola AB00812.1 I
ACLA_041500 Aspergillus clavatus CADACLAG00003643 I
ACRE_039490 Acremonium chrysogenum ACRE_039490 I
AFUA_3G13870 Aspergillus fumigatus CADAFUAG00005882 I
AGABI2DRAFT_177253 Agaricus bisporus AGABI2DRAFT_177253 I
AGOS_ADR249W Ashbya gossypii AGOS_ADR249W N
AMAG_00738 Allomyces macrogynus AMAG_00738 I
AMAG_02241 Allomyces macrogynus AMAG_02241 I
AMAG_02657 Allomyces macrogynus AMAG_02657 I
AMAG_17764 Allomyces macrogynus AMAG_17764 I
AOL_s00075g211 Arthrobotrys oligospora AOL_s00075g211 I
ATEG_04043 Aspergillus terreus CADATEAG00009213 I
AUEXF2481DRAFT_721 Aureobasidium subglaciale AUEXF2481DRAFT_721 I
AWRI1499_1045 Brettanomyces bruxellensis AWRI1499_1045 N
BAUCODRAFT_64949 Baudoinia compniacensis BAUCODRAFT_64949 I
BBA_06064 Beauveria bassiana BBA_06064 I
BBA_09441 Beauveria bassiana BBA_09441 I
BBA_09560 Beauveria bassiana BBA_09560 I
BBA_10233 Beauveria bassiana BBA_10233 I
BBA_10253 Beauveria bassiana BBA_10253 I
Bcin14g03930 Botrytis cinerea Bcin14g03930 I
BDDG_01688 Blastomyces dermatitidis BDDG_01688 I
BGHDH14_bgh03088 Blumeria graminis BGHDH14_bgh03088 I
BN946_scf184754.g8 Trametes cinnabarina BN946_scf184754.g8 I
BOTBODRAFT_149615 Botryobasidium botryosum BOTBODRAFT_149615 I
CADAFLAG00003906 Aspergillus flavus CADAFLAG00003906 I
CADANGAG00002477 Aspergillus niger CADANGAG00002477 I
CADAORAG00006305 Aspergillus oryzae CADAORAG00006305 I
CANTEDRAFT_91588 Candida tenuis CANTEDRAFT_91588 I
CC1G_06265 Coprinopsis cinerea CC1G_06265 I
CCM_00560 Cordyceps militaris CCM_00560 I
CERSUDRAFT_117427 Ceriporiopsis subvermispora CERSUDRAFT_117427 I
CFIO01_13220 Colletotrichum fioriniae CFIO01_13220 I
CGGC5_6860 Colletotrichum gloeosporioides CGGC5_6860 I
CH063_11622 Colletotrichum higginsianum CH063_11622 I
CIMG_00087 Coccidioides immitis CIMG_00087 I
COCSADRAFT_262372 Bipolaris sorokiniana COCSADRAFT_262372 I
CPC735_060480 Coccidioides posadasii CPC735_060480 I
CSUB01_03231 Colletotrichum sublineola CSUB01_03231 I
CTHT_0052380 Chaetomium thermophilum CTHT_0052380 I
DACRYDRAFT_47643 Dacryopinax sp DACRYDRAFT_47643 I
DEHA2F25916g Debaryomyces hansenii DEHA2F25916g I
DOTSEDRAFT_68310 Dothistroma septosporum DOTSEDRAFT_68310 I
DRE_04106 Drechslerella stenobrocha DRE_04106 I
Ecym_6060 Eremothecium cymbalariae Ecym_6060 N
EDP42063.1 Malassezia globosa EDP42063.1 I
EPUS_00825 Endocarpon pusillum EPUS_00825 I
estExt_fgenesh1_pg.C_10665 Mycosphaerella fijiensis estExt_fgenesh1_pg.C_10665 I
estExt_fgenesh1_pg.C_chr_11429 Mycosphaerella graminicola estExt_fgenesh1_pg.C_chr_11429 I
estExt_fgenesh1_pm.C_10224 Cochliobolus heterostrophus C5 estExt_fgenesh1_pm.C_10224 I
estExt_fgenesh1_pm.C_sca_5_chr5_3_00060 Nectria haematococca estExt_fgenesh1_pm.C_sca_5_chr5_3_00060 I
estExt_fgenesh3_kg.C_140077 Neurospora discreta estExt_fgenesh3_kg.C_140077 I
estExt_fgeneshMC_kg.C_30209 Mucor circinelloides estExt_fgeneshMC_kg.C_30209 I
estExt_fgeneshMC_kg.C_30237 Mucor circinelloides estExt_fgeneshMC_kg.C_30237 I
estExt_fgeneshMC_pg.C_50482 Mucor circinelloides estExt_fgeneshMC_pg.C_50482 I
estExt_fgeneshPB_pg.C_70124 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_70124 I
estExt_Genewise1Plus.C_70696 Cryphonectria parasitica estExt_Genewise1Plus.C_70696 I
EuGene17000025 Heterobasidion annosum EuGene17000025 I
EURHEDRAFT_464468 Aspergillus ruber EURHEDRAFT_464468 I
EV44_g2708 Erysiphe necator EV44_g2708 I
F503_08730 Ophiostoma piceae uamh F503_08730 I
FFUJ_07383 Fusarium fujikuroi FFUJ_07383 I
fgenesh1_pg.00866_#_575 Aspergillus carbonarius fgenesh1_pg.00866_#_575 I
fgenesh1_pg.C_scaffold_4000132 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_4000132 I
fgenesh1_pg.sca_83_unmapped000003 Nectria haematococca fgenesh1_pg.sca_83_unmapped000003 I
fgeneshPB_pg.14__263 Phycomyces blakesleeanus fgeneshPB_pg.14__263 I
fgeneshPB_pg.2__705 Phycomyces blakesleeanus fgeneshPB_pg.2__705 I
FGRRES_17300 Fusarium graminearum FGRRES_17300 I
FIBRA_03562 Fibroporia radiculosa FIBRA_03562 I
FOMPIDRAFT_133363 Fomitopsis pinicola FOMPIDRAFT_133363 I
FOXG_05342 Fusarium oxysporum FOXG_05342 I
FOXG_14975 Fusarium oxysporum FOXG_14975 I
G647_01386 Cladophialophora carrionii G647_01386 I
GALMADRAFT_118587 Galerina marginata GALMADRAFT_118587 I
GGTG_07031 Gaeumannomyces graminis GGTG_07031 I
GLOINDRAFT_181922 Rhizophagus irregularis GLOINDRAFT_181922 I
GLOINDRAFT_343272 Rhizophagus irregularis GLOINDRAFT_343272 I
GLOINDRAFT_349729 Rhizophagus irregularis GLOINDRAFT_349729 I
GLOTRDRAFT_140412 Gloeophyllum trabeum GLOTRDRAFT_140412 I
GLRG_03333 Colletotrichum graminicola GLRG_03333 I
GMDG_08277 Pseudogymnoascus destructans GMDG_08277 I
GYMLUDRAFT_48090 Gymnopus luxurians GYMLUDRAFT_48090 I
H072_763 Dactylellina haptotyla H072_763 I
H101_07383 Trichophyton interdigitale H101_07383 I
H102_08281 Trichophyton rubrum H102_08281 I
H105_08310 Trichophyton soudanense H105_08310 I
HCBG_05204 Histoplasma capsulatum HCBG_05204 I
HETIRDRAFT_247589 Heterobasidion irregulare HETIRDRAFT_247589 I
HMPREF1120_00248 Exophiala dermatitidis HMPREF1120_00248 I
HMPREF1541_06379 Cyphellophora europaea HMPREF1541_06379 I
HMPREF1624_00018 Sporothrix schenckii HMPREF1624_00018 I
HYDPIDRAFT_30042 Hydnomerulius pinastri HYDPIDRAFT_30042 I
JAAARDRAFT_72689 Jaapia argillacea JAAARDRAFT_72689 I
K443DRAFT_142600 Laccaria amethystina K443DRAFT_142600 I
LACBIDRAFT_297200 Laccaria bicolor LACBIDRAFT_297200 I
LEMA_P078810.1 Leptosphaeria maculans LEMA_P078810.1 I
M378DRAFT_170228 Amanita muscaria M378DRAFT_170228 I
M404DRAFT_991532 Pisolithus tinctorius M404DRAFT_991532 I
M407DRAFT_63874 Tulasnella calospora M407DRAFT_63874 I
M437DRAFT_55951 Aureobasidium melanogenum M437DRAFT_55951 I
M438DRAFT_352549 Aureobasidium pullulans M438DRAFT_352549 I
MAC_01133 Metarhizium acridum MAC_01133 I
MAJ_03944 Metarhizium majus MAJ_03944 I
MAM_07861 Metarhizium album MAM_07861 I
MANI_023659 Metarhizium anisopliae MANI_023659 I
MAPG_05772 Magnaporthe poae MAPG_05772 I
MBR_01569 Metarhizium brunneum MBR_01569 I
MCYG_00112 Microsporum canis MCYG_00112 I
MCYG_00112 Arthroderma otae MCYG_00112 I
MGG_07319 Magnaporthe oryzae MGG_07319 I
MGU_02247 Metarhizium guizhouense MGU_02247 I
MGYG_00673 Microsporum gypseum MGYG_00673 I
Moror_3883 Moniliophthora roreri Moror_3883 I
MPER_15845 Moniliophthora perniciosa MPER_15845 I
MPH_02070 Macrophomina phaseolina MPH_02070 I
MYCFIDRAFT_85908 Pseudocercospora fijiensis MYCFIDRAFT_85908 I
Mycgr3G107643 Zymoseptoria tritici Mycgr3G107643 I
NCAS_0D01260 Naumovozyma castellii NCAS_0D01260 I
NechaG104418 Fusarium solani NechaG104418 I
NechaG88991 Fusarium solani NechaG88991 I
NEUTE1DRAFT_127702 Neurospora tetrasperma NEUTE1DRAFT_127702 I
NFIA_063400 Neosartorya fischeri CADNFIAG00005846 I
nsdD Aspergillus nidulans CADANIAG00009919 I
OCS_03409 Ophiocordyceps sinensis OCS_03409 I
OIDMADRAFT_154229 Oidiodendron maius OIDMADRAFT_154229 I
PAAG_05818 Paracoccidioides sp lutzii PAAG_05818 I
PABG_05830 Paracoccidioides brasiliensis PABG_05830 I
PAN0_015c5180 Pseudozyma antarctica PAN0_015c5180 I
PAXINDRAFT_134989 Paxillus involutus PAXINDRAFT_134989 I
PAXRUDRAFT_92867 Paxillus rubicundulus PAXRUDRAFT_92867 I
Pc13g15350 Penicillium chrysogenum Pc13g15350 I
Pc21g03670 Penicillium chrysogenum Pc21g03670 I
PCH_Pc13g15350 Penicillium rubens PCH_Pc13g15350 I
PCH_Pc21g03670 Penicillium rubens PCH_Pc21g03670 I
PDE_02029 Penicillium oxalicum PDE_02029 I
PDIP_24050 Penicillium digitatum PDIP_24050 I
PEX1_036690 Penicillium expansum PEX1_036690 I
PFICI_13402 Pestalotiopsis fici PFICI_13402 I
PFL1_04652 Pseudozyma flocculosa PFL1_04652 I
PHACADRAFT_252970 Phanerochaete carnosa PHACADRAFT_252970 I
PHLGIDRAFT_130107 Phlebiopsis gigantea PHLGIDRAFT_130107 I
PHSY_002311 Pseudozyma hubeiensis PHSY_002311 I
PIIN_03483 Piriformospora indica PIIN_03483 I
PIIN_05533 Piriformospora indica PIIN_05533 I
PILCRDRAFT_817785 Piloderma croceum PILCRDRAFT_817785 I
PISMIDRAFT_27336 Pisolithus microcarpus PISMIDRAFT_27336 I
PITC_039600 Penicillium italicum PITC_039600 I
PLEOSDRAFT_1094410 Pleurotus ostreatus PLEOSDRAFT_1094410 I
PLICRDRAFT_701268 Plicaturopsis crispa PLICRDRAFT_701268 I
PMAA_019060 Talaromyces marneffei PMAA_019060 I
PMAA_019060 Penicillium marneffei PMAA_019060 I
PODANS_2_1880 Podospora anserina PODANS_2_1880 I
PSEUBRA_SCAF18g04670 Pseudozyma brasiliensis PSEUBRA_SCAF18g04670 I
PTT_12856 Pyrenophora teres PTT_12856 I
PV04_00647 Capronia semiimmersa PV04_00647 I
PV05_01900 Exophiala xenobiotica PV05_01900 I
PV06_06115 Exophiala oligosperma PV06_06115 I
PV07_05919 Cladophialophora immunda PV07_05919 I
PV08_04845 Exophiala spinifera PV08_04845 I
PV09_05321 Verruconis gallopava PV09_05321 I
PV10_02392 Exophiala mesophila PV10_02392 I
PV11_10134 Exophiala sideris PV11_10134 I
PVAR5_3263 Byssochlamys spectabilis PVAR5_3263 I
RO3G_03309 Rhizopus oryzae RO3G_03309 I
RO3G_15967 Rhizopus oryzae RO3G_15967 I
S40285_04108 Stachybotrys chlorohalonata S40285_04108 I
S40288_07636 Stachybotrys chartarum S40288_07636 I
SBOR_2773 Sclerotinia borealis SBOR_2773 I
SCHCODRAFT_108660 Schizophyllum commune SCHCODRAFT_108660 I
SEPMUDRAFT_78069 Sphaerulina musiva SEPMUDRAFT_78069 I
SERLA73DRAFT_160841 Serpula lacrymans SERLA73DRAFT_160841 I
SMAC_03223 Sordaria macrospora SMAC_03223 I
SNOG_10431 Stagonospora nodorum SNOG_10431 I
sr16104 Sporisorium reilianum sr16104 I
sub-1 Neurospora crassa NCU01154 D
TEQG_01014 Trichophyton equinum TEQG_01014 I
TESG_04545 Trichophyton tonsurans TESG_04545 I
THITE_2106568 Thielavia terrestris THITE_2106568 I
TRIATDRAFT_258818 Trichoderma atroviride TRIATDRAFT_258818 I
TRIREDRAFT_57735 Trichoderma reesei TRIREDRAFT_57735 I
TRIVIDRAFT_214458 Trichoderma virens TRIVIDRAFT_214458 I
TSTA_027060 Talaromyces stipitatus TSTA_027060 I
U727_00433161111 Penicillium solitum U727_00433161111 I
UHOR_07508 Ustilago hordei UHOR_07508 I
UM05773 Ustilago maydis UM05773 I
V499_02833 Pseudogymnoascus pannorum V499_02833 I
V565_040510 Rhizoctonia solani V565_040510 I
V565_084370 Rhizoctonia solani V565_084370 I
V565_302880 Rhizoctonia solani V565_302880 I
VDBG_00527 Verticillium albo atrum VDBG_00527 I
VDBG_00527 Verticillium alfalfae VDBG_00527 I
VHEMI08657 Torrubiella hemipterigena VHEMI08657 I
W97_08308 Coniosporium apollinis W97_08308 I
X797_002080 Metarhizium robertsii X797_002080 I
Z517_07105 Fonsecaea pedrosoi Z517_07105 I
Z518_02217 Rhinocladiella mackenziei Z518_02217 I
Z519_00470 Cladophialophora bantiana Z519_00470 I