PBX1 (Meleagris gallopavo)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSMGAG00000003669 T211467_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.867 1.000
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.867 1.000
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.867 1.000
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.867 1.000
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.867 1.000
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.867 1.000
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.867 1.000
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.867 1.000
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.867 1.000
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.867 1.000
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.867 1.000
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.867 1.000
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.867 1.000
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.867 1.000
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.867 0.982
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.867 0.965
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.867 0.965
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.867 0.965
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.865 0.965
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.822 0.947
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.822 0.947
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.822 0.947
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.822 0.947
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.822 0.947
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.815 0.877
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.815 0.877
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.691 0.579
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.677 0.860
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMGAP00000003431 Homeodomain 147 206

Links

Other Homeodomain family TFs
Other Meleagris gallopavo TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29625.m000702 Ricinus communis 29625.m000702 I
30055.m001548 Ricinus communis 30055.m001548 I
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I
Aquca_009_00009 Aquilegia coerulea Aquca_009_00009 I
ATBZIP27 Arabidopsis thaliana AT2G17770 I
BGIOSGA004837 Oryza indica BGIOSGA004837 I
Cagra.1642s0072 Capsella grandiflora Cagra.1642s0072 I
Carubv10023893m.g Capsella rubella Carubv10023893m.g I
cassava16074.m1 Manihot esculenta cassava16074.m1 I
cassava17300.m1 Manihot esculenta cassava17300.m1 I
chr2.CM0695.170.nc Lotus japonicus chr2.CM0695.170.nc I
Ciclev10028635m.g Citrus clementina Ciclev10028635m.g I
Cla009066 Citrullus lanatus Cla009066 I
Cucsa.322810 Cucumis sativus Cucsa.322810 N
F775_32479 Aegilops tauschii F775_32479 I
FD Arabidopsis lyrata Al_scaffold_0007_453 I
FD Arabidopsis thaliana AT4G35900 I
gene09110-v1.0-hybrid Fragaria vesca gene09110-v1.0-hybrid I
gene14556-v1.0-hybrid Fragaria vesca gene14556-v1.0-hybrid I
GLYMA04G14840 Glycine max GLYMA04G14840 I
GLYMA06G47220 Glycine max GLYMA06G47220 I
Gorai.003G007000 Gossypium raimondii Gorai.003G007000 N
Gorai.007G191800 Gossypium raimondii Gorai.007G191800 I
GRMZM2G168079 Zea mays GRMZM2G168079 I
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I
LPERR01G32620 Leersia perrieri LPERR01G32620 I
Lus10014194.g Linum usitatissimum Lus10014194.g I
Lus10022720.g Linum usitatissimum Lus10022720.g I
MLOC_34679 Hordeum vulgare MLOC_34679 I
OB01G46760 Oryza brachyantha OB01G46760 I
OBART01G37980 Oryza barthii OBART01G37980 I
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I
OLONG_014546 Oryza longistaminata OLONG_014546 I
OMERI01G34950 Oryza meridionalis OMERI01G34950 I
ONIVA04G25730 Oryza nivara ONIVA04G25730 I
orange1.1g037676m.g Citrus sinensis orange1.1g037676m.g I
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I
OS01G0859300 Oryza sativa OS01G0859300 I
Pavir.J35078 Panicum virgatum Pavir.J35078 I
PGSC0003DMG400007208 Solanum tuberosum PGSC0003DMG400007208 I
PK24978.1 Cannabis sativa PK24978.1 D
Pm001315 Prunus mume Pm001315 I
POPTR_0009s16610 Populus trichocarpa POPTR_0009s16610 I
SapurV1A.0016s1330 Salix purpurea SapurV1A.0016s1330 I
SapurV1A.0025s0010 Salix purpurea SapurV1A.0025s0010 I
SapurV1A.0374s0070 Salix purpurea SapurV1A.0374s0070 I
SELMODRAFT_177659 Selaginella moellendorffii SELMODRAFT_177659 I
SELMODRAFT_266892 Selaginella moellendorffii SELMODRAFT_266892 I
SELMODRAFT_428822 Selaginella moellendorffii SELMODRAFT_428822 I
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I
TCM_000152 Theobroma cacao TCM_000152 I
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I
TRIUR3_31111 Triticum urartu TRIUR3_31111 I